Experiment: Dodecyl Sulfate 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1786 and Atu1787 are separated by 204 nucleotides Atu1787 and Atu1788 are separated by 206 nucleotides
Atu1786: Atu1786 - glucosamine-fructose-6-phosphate aminotransferase, at 1,770,746 to 1,772,572
Atu1786
Atu1787: Atu1787 - UDP-N-acetylglucosamine pyrophosphorylase, at 1,772,777 to 1,774,138
Atu1787
Atu1788: Atu1788 - transcriptional regulator, GntR family, at 1,774,345 to 1,775,082
Atu1788
Position (kb)
1772
1773
1774
1775 Strain fitness (log2 ratio)
-2
-1
0
1 at 1774.175 kb on - strand at 1774.345 kb on - strand at 1774.345 kb on - strand at 1774.452 kb on - strand, within Atu1788 at 1774.552 kb on - strand, within Atu1788 at 1774.557 kb on + strand, within Atu1788 at 1774.557 kb on + strand, within Atu1788 at 1774.565 kb on - strand, within Atu1788 at 1774.660 kb on - strand, within Atu1788 at 1774.815 kb on - strand, within Atu1788 at 1774.872 kb on + strand, within Atu1788 at 1774.872 kb on + strand, within Atu1788 at 1774.880 kb on - strand, within Atu1788 at 1774.882 kb on + strand, within Atu1788 at 1774.890 kb on - strand, within Atu1788 at 1774.926 kb on - strand, within Atu1788 at 1774.937 kb on + strand, within Atu1788 at 1774.945 kb on - strand, within Atu1788 at 1774.970 kb on + strand, within Atu1788 at 1774.983 kb on - strand, within Atu1788 at 1774.985 kb on + strand, within Atu1788 at 1774.986 kb on + strand, within Atu1788 at 1774.986 kb on + strand, within Atu1788 at 1774.993 kb on - strand, within Atu1788 at 1775.007 kb on + strand, within Atu1788
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecyl Sulfate 0.2 mM remove 1,774,175 - +0.0 1,774,345 - -0.2 1,774,345 - -2.5 1,774,452 - Atu1788 0.14 +0.5 1,774,552 - Atu1788 0.28 -0.5 1,774,557 + Atu1788 0.29 -0.2 1,774,557 + Atu1788 0.29 +0.1 1,774,565 - Atu1788 0.30 -0.1 1,774,660 - Atu1788 0.43 -0.3 1,774,815 - Atu1788 0.64 -0.5 1,774,872 + Atu1788 0.71 +0.5 1,774,872 + Atu1788 0.71 -0.5 1,774,880 - Atu1788 0.72 +0.6 1,774,882 + Atu1788 0.73 -0.9 1,774,890 - Atu1788 0.74 +0.4 1,774,926 - Atu1788 0.79 -0.1 1,774,937 + Atu1788 0.80 -1.0 1,774,945 - Atu1788 0.81 +0.3 1,774,970 + Atu1788 0.85 +0.1 1,774,983 - Atu1788 0.86 -0.6 1,774,985 + Atu1788 0.87 -0.7 1,774,986 + Atu1788 0.87 +0.3 1,774,986 + Atu1788 0.87 +0.9 1,774,993 - Atu1788 0.88 +1.2 1,775,007 + Atu1788 0.90 -0.0
Or see this region's nucleotide sequence