Experiment: Dodecyl Sulfate 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8090 and Atu1505 are separated by 138 nucleotides Atu1505 and Atu1506 are separated by 83 nucleotides Atu1506 and Atu1507 are separated by 96 nucleotides
Atu8090: Atu8090 - hypothetical protein, at 1,493,163 to 1,493,882
Atu8090
Atu1505: Atu1505 - penicillin-binding protein, at 1,494,021 to 1,495,520
Atu1505
Atu1506: Atu1506 - hypothetical protein, at 1,495,604 to 1,495,864
Atu1506
Atu1507: Atu1507 - DNA gyrase subunit A, at 1,495,961 to 1,498,681
Atu1507
Position (kb)
1494
1495
1496 Strain fitness (log2 ratio)
-2
-1
0
1 at 1493.021 kb on + strand at 1493.055 kb on - strand at 1493.055 kb on - strand at 1493.102 kb on - strand at 1493.186 kb on - strand at 1493.204 kb on - strand at 1493.257 kb on - strand, within Atu8090 at 1493.376 kb on + strand, within Atu8090 at 1493.384 kb on - strand, within Atu8090 at 1493.423 kb on + strand, within Atu8090 at 1493.431 kb on - strand, within Atu8090 at 1493.431 kb on - strand, within Atu8090 at 1493.435 kb on + strand, within Atu8090 at 1493.443 kb on - strand, within Atu8090 at 1493.450 kb on - strand, within Atu8090 at 1493.535 kb on + strand, within Atu8090 at 1493.548 kb on + strand, within Atu8090 at 1493.563 kb on + strand, within Atu8090 at 1493.576 kb on - strand, within Atu8090 at 1493.686 kb on + strand, within Atu8090 at 1493.758 kb on + strand, within Atu8090 at 1493.887 kb on + strand at 1493.900 kb on - strand at 1495.253 kb on + strand, within Atu1505
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecyl Sulfate 0.2 mM remove 1,493,021 + -0.2 1,493,055 - -0.0 1,493,055 - +0.1 1,493,102 - -0.0 1,493,186 - -0.2 1,493,204 - -0.2 1,493,257 - Atu8090 0.13 -0.2 1,493,376 + Atu8090 0.30 +1.0 1,493,384 - Atu8090 0.31 -0.2 1,493,423 + Atu8090 0.36 +0.4 1,493,431 - Atu8090 0.37 +0.1 1,493,431 - Atu8090 0.37 +0.0 1,493,435 + Atu8090 0.38 -0.5 1,493,443 - Atu8090 0.39 +0.5 1,493,450 - Atu8090 0.40 -0.4 1,493,535 + Atu8090 0.52 +0.1 1,493,548 + Atu8090 0.53 +1.0 1,493,563 + Atu8090 0.56 +0.1 1,493,576 - Atu8090 0.57 +0.2 1,493,686 + Atu8090 0.73 +0.3 1,493,758 + Atu8090 0.83 +0.8 1,493,887 + -0.3 1,493,900 - +0.4 1,495,253 + Atu1505 0.82 -2.5
Or see this region's nucleotide sequence