Strain Fitness in Agrobacterium fabrum C58 around Atu1306

Experiment: Dodecyl Sulfate 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1305 and Atu1306 are separated by 21 nucleotidesAtu1306 and Atu1307 are separated by 57 nucleotides Atu1305: Atu1305 - DNA processing chain A, at 1,297,167 to 1,298,309 Atu1305 Atu1306: Atu1306 - hypothetical protein, at 1,298,331 to 1,298,939 Atu1306 Atu1307: Atu1307 - dihydroorotase, at 1,298,997 to 1,300,289 Atu1307 Position (kb) 1298 1299Strain fitness (log2 ratio) -1 0 1 2at 1297.343 kb on - strand, within Atu1305at 1297.348 kb on - strand, within Atu1305at 1297.395 kb on + strand, within Atu1305at 1297.395 kb on + strand, within Atu1305at 1297.440 kb on - strand, within Atu1305at 1297.527 kb on - strand, within Atu1305at 1297.582 kb on + strand, within Atu1305at 1297.582 kb on + strand, within Atu1305at 1297.720 kb on - strand, within Atu1305at 1297.751 kb on + strand, within Atu1305at 1297.795 kb on + strand, within Atu1305at 1297.823 kb on + strand, within Atu1305at 1297.831 kb on - strand, within Atu1305at 1297.841 kb on + strand, within Atu1305at 1297.849 kb on - strand, within Atu1305at 1297.876 kb on - strand, within Atu1305at 1297.906 kb on - strand, within Atu1305at 1297.908 kb on + strand, within Atu1305at 1297.914 kb on - strand, within Atu1305at 1297.963 kb on - strand, within Atu1305at 1298.136 kb on - strand, within Atu1305at 1298.181 kb on + strand, within Atu1305at 1298.190 kb on + strand, within Atu1305at 1298.248 kb on + strandat 1298.306 kb on + strandat 1298.317 kb on - strandat 1298.335 kb on - strandat 1298.965 kb on - strandat 1298.970 kb on - strandat 1298.991 kb on - strandat 1299.041 kb on + strandat 1299.153 kb on - strand, within Atu1307at 1299.163 kb on + strand, within Atu1307at 1299.452 kb on + strand, within Atu1307at 1299.628 kb on - strand, within Atu1307at 1299.628 kb on - strand, within Atu1307at 1299.891 kb on - strand, within Atu1307

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecyl Sulfate 0.2 mM
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1,297,343 - Atu1305 0.15 +1.4
1,297,348 - Atu1305 0.16 +0.7
1,297,395 + Atu1305 0.20 +0.4
1,297,395 + Atu1305 0.20 -0.5
1,297,440 - Atu1305 0.24 +0.1
1,297,527 - Atu1305 0.31 -0.6
1,297,582 + Atu1305 0.36 +0.3
1,297,582 + Atu1305 0.36 +0.1
1,297,720 - Atu1305 0.48 -0.1
1,297,751 + Atu1305 0.51 +0.1
1,297,795 + Atu1305 0.55 +0.1
1,297,823 + Atu1305 0.57 +0.1
1,297,831 - Atu1305 0.58 +0.9
1,297,841 + Atu1305 0.59 +1.4
1,297,849 - Atu1305 0.60 +0.4
1,297,876 - Atu1305 0.62 +0.4
1,297,906 - Atu1305 0.65 +0.5
1,297,908 + Atu1305 0.65 +2.6
1,297,914 - Atu1305 0.65 +0.3
1,297,963 - Atu1305 0.70 +0.3
1,298,136 - Atu1305 0.85 -0.7
1,298,181 + Atu1305 0.89 +0.2
1,298,190 + Atu1305 0.90 -0.3
1,298,248 + +0.6
1,298,306 + +0.2
1,298,317 - -0.1
1,298,335 - +1.4
1,298,965 - +0.1
1,298,970 - +0.6
1,298,991 - -0.1
1,299,041 + -0.2
1,299,153 - Atu1307 0.12 +0.3
1,299,163 + Atu1307 0.13 -0.5
1,299,452 + Atu1307 0.35 +0.5
1,299,628 - Atu1307 0.49 -0.1
1,299,628 - Atu1307 0.49 +0.6
1,299,891 - Atu1307 0.69 +0.4

Or see this region's nucleotide sequence