Experiment: p-Coumaric 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8203 and Atu5175 are separated by 207 nucleotides Atu5175 and Atu5176 are separated by 1 nucleotides Atu5176 and Atu5177 are separated by 246 nucleotides
Atu8203: Atu8203 - hypothetical protein, at 171,061 to 171,345
Atu8203
Atu5175: Atu5175 - two component response regulator, at 171,553 to 172,227
Atu5175
Atu5176: Atu5176 - two component sensor kinase, at 172,229 to 173,578
Atu5176
Atu5177: Atu5177 - efflux protein, at 173,825 to 175,018
Atu5177
Position (kb) 172
173
174 Strain fitness (log2 ratio) -1
0
1 at 171.240 kb on - strand, within Atu8203 at 171.240 kb on - strand, within Atu8203 at 171.291 kb on + strand, within Atu8203 at 171.321 kb on + strand at 171.371 kb on - strand at 171.376 kb on - strand at 171.385 kb on + strand at 171.417 kb on - strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.608 kb on + strand at 171.609 kb on - strand at 171.623 kb on + strand, within Atu5175 at 171.628 kb on + strand, within Atu5175 at 171.726 kb on + strand, within Atu5175 at 171.734 kb on - strand, within Atu5175 at 171.745 kb on + strand, within Atu5175 at 171.753 kb on - strand, within Atu5175 at 171.833 kb on - strand, within Atu5175 at 171.838 kb on + strand, within Atu5175 at 171.841 kb on - strand, within Atu5175 at 171.895 kb on + strand, within Atu5175 at 171.903 kb on - strand, within Atu5175 at 171.914 kb on + strand, within Atu5175 at 171.914 kb on + strand, within Atu5175 at 171.979 kb on - strand, within Atu5175 at 172.015 kb on + strand, within Atu5175 at 172.017 kb on + strand, within Atu5175 at 172.057 kb on + strand, within Atu5175 at 172.067 kb on + strand, within Atu5175 at 172.084 kb on + strand, within Atu5175 at 172.091 kb on - strand, within Atu5175 at 172.231 kb on + strand at 172.277 kb on + strand at 172.282 kb on + strand at 172.285 kb on - strand at 172.306 kb on - strand at 172.308 kb on + strand at 172.403 kb on - strand, within Atu5176 at 172.419 kb on + strand, within Atu5176 at 172.509 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.603 kb on - strand, within Atu5176 at 172.694 kb on - strand, within Atu5176 at 172.694 kb on - strand, within Atu5176 at 172.766 kb on + strand, within Atu5176 at 172.835 kb on + strand, within Atu5176 at 172.862 kb on + strand, within Atu5176 at 172.994 kb on - strand, within Atu5176 at 172.999 kb on + strand, within Atu5176 at 172.999 kb on - strand, within Atu5176 at 173.025 kb on + strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.042 kb on - strand, within Atu5176 at 173.092 kb on - strand, within Atu5176 at 173.143 kb on - strand, within Atu5176 at 173.294 kb on + strand, within Atu5176 at 173.306 kb on + strand, within Atu5176 at 173.330 kb on - strand, within Atu5176 at 173.411 kb on - strand, within Atu5176 at 173.419 kb on - strand, within Atu5176 at 173.436 kb on + strand, within Atu5176 at 173.442 kb on - strand, within Atu5176 at 173.444 kb on - strand at 173.458 kb on + strand at 173.458 kb on + strand at 173.463 kb on - strand at 173.508 kb on + strand at 173.547 kb on + strand at 173.574 kb on + strand at 173.872 kb on + strand at 174.115 kb on + strand, within Atu5177 at 174.123 kb on - strand, within Atu5177 at 174.123 kb on - strand, within Atu5177 at 174.148 kb on + strand, within Atu5177 at 174.154 kb on + strand, within Atu5177 at 174.154 kb on + strand, within Atu5177 at 174.162 kb on - strand, within Atu5177 at 174.190 kb on + strand, within Atu5177 at 174.205 kb on - strand, within Atu5177 at 174.248 kb on - strand, within Atu5177 at 174.249 kb on + strand, within Atu5177 at 174.278 kb on + strand, within Atu5177 at 174.288 kb on - strand, within Atu5177 at 174.309 kb on - strand, within Atu5177 at 174.331 kb on + strand, within Atu5177 at 174.348 kb on + strand, within Atu5177 at 174.362 kb on + strand, within Atu5177 at 174.362 kb on + strand, within Atu5177 at 174.374 kb on + strand, within Atu5177 at 174.445 kb on + strand, within Atu5177 at 174.451 kb on - strand, within Atu5177 at 174.489 kb on + strand, within Atu5177 at 174.497 kb on - strand, within Atu5177
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric 1.25 mM remove 171,240 - Atu8203 0.63 +0.0 171,240 - Atu8203 0.63 +0.0 171,291 + Atu8203 0.81 -0.1 171,321 + -0.3 171,371 - -0.3 171,376 - -0.1 171,385 + +0.3 171,417 - +0.1 171,602 + +0.2 171,602 + +0.1 171,608 + -0.3 171,609 - -0.2 171,623 + Atu5175 0.10 -0.0 171,628 + Atu5175 0.11 +0.8 171,726 + Atu5175 0.26 +1.6 171,734 - Atu5175 0.27 -0.3 171,745 + Atu5175 0.28 -0.2 171,753 - Atu5175 0.30 +0.3 171,833 - Atu5175 0.41 -0.3 171,838 + Atu5175 0.42 -0.6 171,841 - Atu5175 0.43 -0.3 171,895 + Atu5175 0.51 +0.2 171,903 - Atu5175 0.52 +0.1 171,914 + Atu5175 0.53 +0.0 171,914 + Atu5175 0.53 -0.0 171,979 - Atu5175 0.63 +0.0 172,015 + Atu5175 0.68 -0.3 172,017 + Atu5175 0.69 -0.5 172,057 + Atu5175 0.75 -0.4 172,067 + Atu5175 0.76 -0.0 172,084 + Atu5175 0.79 +0.8 172,091 - Atu5175 0.80 -0.5 172,231 + -0.0 172,277 + +0.1 172,282 + -1.7 172,285 - +0.0 172,306 - +0.2 172,308 + +1.3 172,403 - Atu5176 0.13 +0.0 172,419 + Atu5176 0.14 -0.4 172,509 - Atu5176 0.21 -0.1 172,569 - Atu5176 0.25 +0.3 172,569 - Atu5176 0.25 -0.1 172,569 - Atu5176 0.25 +0.1 172,603 - Atu5176 0.28 +1.1 172,694 - Atu5176 0.34 -0.1 172,694 - Atu5176 0.34 -0.3 172,766 + Atu5176 0.40 -0.0 172,835 + Atu5176 0.45 +0.1 172,862 + Atu5176 0.47 +0.4 172,994 - Atu5176 0.57 +0.4 172,999 + Atu5176 0.57 +0.9 172,999 - Atu5176 0.57 -1.1 173,025 + Atu5176 0.59 -0.1 173,033 - Atu5176 0.60 +0.2 173,033 - Atu5176 0.60 +1.0 173,033 - Atu5176 0.60 +0.3 173,042 - Atu5176 0.60 -0.7 173,092 - Atu5176 0.64 -1.2 173,143 - Atu5176 0.68 +0.2 173,294 + Atu5176 0.79 -0.1 173,306 + Atu5176 0.80 -0.7 173,330 - Atu5176 0.82 -0.4 173,411 - Atu5176 0.88 +0.6 173,419 - Atu5176 0.88 +0.0 173,436 + Atu5176 0.89 -0.4 173,442 - Atu5176 0.90 -0.3 173,444 - -0.0 173,458 + +1.2 173,458 + -0.2 173,463 - +0.9 173,508 + +0.2 173,547 + +0.1 173,574 + +0.3 173,872 + -0.3 174,115 + Atu5177 0.24 +0.3 174,123 - Atu5177 0.25 -0.1 174,123 - Atu5177 0.25 -0.0 174,148 + Atu5177 0.27 +0.4 174,154 + Atu5177 0.28 -0.0 174,154 + Atu5177 0.28 +0.3 174,162 - Atu5177 0.28 +0.3 174,190 + Atu5177 0.31 -0.1 174,205 - Atu5177 0.32 +0.7 174,248 - Atu5177 0.35 -0.1 174,249 + Atu5177 0.36 -0.0 174,278 + Atu5177 0.38 -0.1 174,288 - Atu5177 0.39 -0.0 174,309 - Atu5177 0.41 +0.4 174,331 + Atu5177 0.42 +0.1 174,348 + Atu5177 0.44 -0.8 174,362 + Atu5177 0.45 +0.2 174,362 + Atu5177 0.45 +0.2 174,374 + Atu5177 0.46 -0.0 174,445 + Atu5177 0.52 +0.3 174,451 - Atu5177 0.52 -1.4 174,489 + Atu5177 0.56 +0.7 174,497 - Atu5177 0.56 -0.0
Or see this region's nucleotide sequence