Strain Fitness in Agrobacterium fabrum C58 around Atu8127

Experiment: Pyrogallol 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0454 and Atu8126 are separated by 208 nucleotidesAtu8126 and Atu8127 are separated by 12 nucleotidesAtu8127 and Atu0457 are separated by 113 nucleotides Atu0454: Atu0454 - hypothetical protein, at 448,758 to 449,309 Atu0454 Atu8126: Atu8126 - putative phage tail protein I, at 449,518 to 450,183 Atu8126 Atu8127: Atu8127 - hypothetical protein, at 450,196 to 452,397 Atu8127 Atu0457: Atu0457 - hypothetical protein, at 452,511 to 454,250 Atu0457 Position (kb) 450 451 452 453Strain fitness (log2 ratio) -1 0 1 2at 449.227 kb on + strand, within Atu0454at 449.288 kb on - strandat 449.294 kb on - strandat 449.342 kb on - strandat 449.457 kb on + strandat 449.472 kb on - strandat 449.525 kb on + strandat 449.525 kb on + strandat 449.533 kb on - strandat 449.533 kb on - strandat 449.606 kb on - strand, within Atu8126at 449.622 kb on - strand, within Atu8126at 449.622 kb on - strand, within Atu8126at 449.622 kb on - strand, within Atu8126at 449.775 kb on - strand, within Atu8126at 449.868 kb on - strand, within Atu8126at 449.920 kb on + strand, within Atu8126at 449.930 kb on - strand, within Atu8126at 449.975 kb on + strand, within Atu8126at 450.109 kb on + strand, within Atu8126at 450.110 kb on + strand, within Atu8126at 450.177 kb on + strandat 450.179 kb on + strandat 450.180 kb on - strandat 450.191 kb on + strandat 450.192 kb on - strandat 450.272 kb on + strandat 450.308 kb on + strandat 450.311 kb on - strandat 450.411 kb on + strandat 450.421 kb on + strand, within Atu8127at 450.455 kb on + strand, within Atu8127at 450.458 kb on - strand, within Atu8127at 450.463 kb on - strand, within Atu8127at 450.465 kb on + strand, within Atu8127at 450.465 kb on + strand, within Atu8127at 450.473 kb on - strand, within Atu8127at 450.478 kb on + strand, within Atu8127at 450.486 kb on - strand, within Atu8127at 450.570 kb on - strand, within Atu8127at 450.660 kb on - strand, within Atu8127at 450.675 kb on - strand, within Atu8127at 450.687 kb on + strand, within Atu8127at 450.731 kb on + strand, within Atu8127at 450.751 kb on + strand, within Atu8127at 450.759 kb on - strand, within Atu8127at 450.834 kb on + strand, within Atu8127at 450.839 kb on + strand, within Atu8127at 450.893 kb on + strand, within Atu8127at 450.998 kb on + strand, within Atu8127at 451.119 kb on - strand, within Atu8127at 451.282 kb on + strand, within Atu8127at 451.320 kb on - strand, within Atu8127at 451.380 kb on + strand, within Atu8127at 451.410 kb on + strand, within Atu8127at 451.422 kb on + strand, within Atu8127at 451.434 kb on + strand, within Atu8127at 451.455 kb on - strand, within Atu8127at 451.492 kb on + strand, within Atu8127at 451.514 kb on + strand, within Atu8127at 451.514 kb on + strand, within Atu8127at 451.514 kb on + strand, within Atu8127at 451.514 kb on + strand, within Atu8127at 451.514 kb on + strand, within Atu8127at 451.514 kb on + strand, within Atu8127at 451.514 kb on + strand, within Atu8127at 451.522 kb on - strand, within Atu8127at 451.522 kb on - strand, within Atu8127at 451.522 kb on - strand, within Atu8127at 451.614 kb on + strand, within Atu8127at 451.661 kb on + strand, within Atu8127at 451.669 kb on - strand, within Atu8127at 451.748 kb on - strand, within Atu8127at 451.819 kb on - strand, within Atu8127at 451.819 kb on - strand, within Atu8127at 451.819 kb on - strand, within Atu8127at 451.847 kb on - strand, within Atu8127at 451.879 kb on - strand, within Atu8127at 451.879 kb on - strand, within Atu8127at 451.888 kb on + strand, within Atu8127at 451.896 kb on + strand, within Atu8127at 451.911 kb on - strand, within Atu8127at 451.960 kb on - strand, within Atu8127at 452.000 kb on - strand, within Atu8127at 452.002 kb on + strand, within Atu8127at 452.002 kb on + strand, within Atu8127at 452.010 kb on - strand, within Atu8127at 452.137 kb on + strand, within Atu8127at 452.164 kb on + strand, within Atu8127at 452.172 kb on - strand, within Atu8127at 452.173 kb on + strand, within Atu8127at 452.202 kb on + strandat 452.223 kb on + strandat 452.228 kb on + strandat 452.231 kb on - strandat 452.236 kb on - strandat 452.242 kb on + strandat 452.288 kb on + strandat 452.289 kb on - strandat 452.289 kb on - strandat 452.312 kb on - strandat 452.371 kb on - strandat 452.615 kb on + strandat 452.620 kb on + strandat 452.620 kb on + strandat 452.628 kb on - strandat 452.628 kb on - strandat 452.775 kb on - strand, within Atu0457at 452.775 kb on - strand, within Atu0457at 452.786 kb on + strand, within Atu0457at 452.852 kb on + strand, within Atu0457at 452.869 kb on + strand, within Atu0457at 452.921 kb on - strand, within Atu0457at 452.921 kb on - strand, within Atu0457at 452.946 kb on + strand, within Atu0457at 452.959 kb on - strand, within Atu0457at 453.049 kb on + strand, within Atu0457at 453.059 kb on + strand, within Atu0457at 453.114 kb on + strand, within Atu0457at 453.226 kb on - strand, within Atu0457

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyrogallol 0.5 mM
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449,227 + Atu0454 0.85 +0.6
449,288 - +0.9
449,294 - +0.6
449,342 - +0.8
449,457 + +0.2
449,472 - +1.0
449,525 + -0.0
449,525 + +0.7
449,533 - -0.4
449,533 - +0.8
449,606 - Atu8126 0.13 +0.3
449,622 - Atu8126 0.16 +1.4
449,622 - Atu8126 0.16 +1.5
449,622 - Atu8126 0.16 +1.6
449,775 - Atu8126 0.39 +1.0
449,868 - Atu8126 0.53 +1.1
449,920 + Atu8126 0.60 +0.4
449,930 - Atu8126 0.62 +0.4
449,975 + Atu8126 0.69 +0.5
450,109 + Atu8126 0.89 +0.6
450,110 + Atu8126 0.89 +0.2
450,177 + +0.4
450,179 + +0.7
450,180 - +0.7
450,191 + +0.4
450,192 - +0.3
450,272 + +0.7
450,308 + +1.0
450,311 - +0.7
450,411 + +0.9
450,421 + Atu8127 0.10 +0.9
450,455 + Atu8127 0.12 +0.5
450,458 - Atu8127 0.12 +0.6
450,463 - Atu8127 0.12 +1.3
450,465 + Atu8127 0.12 +0.5
450,465 + Atu8127 0.12 +1.2
450,473 - Atu8127 0.13 +1.0
450,478 + Atu8127 0.13 +0.5
450,486 - Atu8127 0.13 +2.0
450,570 - Atu8127 0.17 +1.5
450,660 - Atu8127 0.21 +0.6
450,675 - Atu8127 0.22 +0.5
450,687 + Atu8127 0.22 +0.9
450,731 + Atu8127 0.24 +0.6
450,751 + Atu8127 0.25 +0.7
450,759 - Atu8127 0.26 +0.3
450,834 + Atu8127 0.29 +1.0
450,839 + Atu8127 0.29 +0.6
450,893 + Atu8127 0.32 +0.4
450,998 + Atu8127 0.36 +1.1
451,119 - Atu8127 0.42 +0.8
451,282 + Atu8127 0.49 +0.3
451,320 - Atu8127 0.51 +0.2
451,380 + Atu8127 0.54 +1.6
451,410 + Atu8127 0.55 +0.9
451,422 + Atu8127 0.56 +0.1
451,434 + Atu8127 0.56 +0.8
451,455 - Atu8127 0.57 +0.6
451,492 + Atu8127 0.59 +0.4
451,514 + Atu8127 0.60 +0.6
451,514 + Atu8127 0.60 +0.9
451,514 + Atu8127 0.60 +0.8
451,514 + Atu8127 0.60 +0.8
451,514 + Atu8127 0.60 +0.8
451,514 + Atu8127 0.60 +0.6
451,514 + Atu8127 0.60 +2.2
451,522 - Atu8127 0.60 +0.9
451,522 - Atu8127 0.60 +1.0
451,522 - Atu8127 0.60 +0.9
451,614 + Atu8127 0.64 +0.5
451,661 + Atu8127 0.67 +1.0
451,669 - Atu8127 0.67 +0.7
451,748 - Atu8127 0.70 +1.2
451,819 - Atu8127 0.74 +1.0
451,819 - Atu8127 0.74 +0.5
451,819 - Atu8127 0.74 +1.0
451,847 - Atu8127 0.75 +0.5
451,879 - Atu8127 0.76 -0.6
451,879 - Atu8127 0.76 +1.0
451,888 + Atu8127 0.77 +0.3
451,896 + Atu8127 0.77 +0.8
451,911 - Atu8127 0.78 +0.8
451,960 - Atu8127 0.80 -0.1
452,000 - Atu8127 0.82 +1.8
452,002 + Atu8127 0.82 +0.4
452,002 + Atu8127 0.82 +0.9
452,010 - Atu8127 0.82 +1.0
452,137 + Atu8127 0.88 +0.8
452,164 + Atu8127 0.89 +0.9
452,172 - Atu8127 0.90 +0.8
452,173 + Atu8127 0.90 +0.6
452,202 + +1.0
452,223 + +0.1
452,228 + -0.1
452,231 - +1.0
452,236 - +0.5
452,242 + +0.9
452,288 + +0.4
452,289 - +0.3
452,289 - +0.9
452,312 - +0.5
452,371 - +1.1
452,615 + +1.4
452,620 + -0.1
452,620 + +1.4
452,628 - +0.8
452,628 - +1.0
452,775 - Atu0457 0.15 +1.1
452,775 - Atu0457 0.15 +1.4
452,786 + Atu0457 0.16 +1.8
452,852 + Atu0457 0.20 +0.9
452,869 + Atu0457 0.21 +0.7
452,921 - Atu0457 0.24 +0.8
452,921 - Atu0457 0.24 +0.7
452,946 + Atu0457 0.25 +0.5
452,959 - Atu0457 0.26 +0.9
453,049 + Atu0457 0.31 +0.6
453,059 + Atu0457 0.31 +1.0
453,114 + Atu0457 0.35 +0.4
453,226 - Atu0457 0.41 +0.1

Or see this region's nucleotide sequence