Experiment: Pyrogallol 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0449 and Atu0450 are separated by 109 nucleotides Atu0450 and Atu8125 are separated by 244 nucleotides Atu8125 and Atu8083 are separated by 82 nucleotides
Atu0449: Atu0449 - hypothetical protein, at 443,396 to 444,616
Atu0449
Atu0450: Atu0450 - transcription antitermination protein, at 444,726 to 445,292
Atu0450
Atu8125: Atu8125 - hypothetical protein, at 445,537 to 446,106
Atu8125
Atu8083: Atu8083 - hypothetical protein, at 446,189 to 447,001
Atu8083
Position (kb) 445
446
447 Strain fitness (log2 ratio) -1
0
1
2 at 444.649 kb on + strand at 444.656 kb on + strand at 444.770 kb on - strand at 444.776 kb on + strand at 444.922 kb on + strand, within Atu0450 at 444.932 kb on + strand, within Atu0450 at 444.935 kb on - strand, within Atu0450 at 444.940 kb on - strand, within Atu0450 at 444.940 kb on - strand, within Atu0450 at 444.967 kb on + strand, within Atu0450 at 444.970 kb on - strand, within Atu0450 at 444.977 kb on + strand, within Atu0450 at 444.993 kb on - strand, within Atu0450 at 445.010 kb on + strand, within Atu0450 at 445.010 kb on + strand, within Atu0450 at 445.018 kb on - strand, within Atu0450 at 445.092 kb on - strand, within Atu0450 at 445.099 kb on - strand, within Atu0450 at 445.101 kb on + strand, within Atu0450 at 445.103 kb on + strand, within Atu0450 at 445.111 kb on - strand, within Atu0450 at 445.150 kb on - strand, within Atu0450 at 445.224 kb on - strand, within Atu0450 at 445.227 kb on - strand, within Atu0450 at 445.265 kb on - strand at 445.267 kb on + strand at 445.275 kb on - strand at 445.292 kb on + strand at 445.300 kb on - strand at 445.300 kb on - strand at 445.305 kb on - strand at 445.443 kb on + strand at 445.481 kb on + strand at 445.508 kb on + strand at 445.571 kb on + strand at 445.624 kb on + strand, within Atu8125 at 445.745 kb on + strand, within Atu8125 at 445.871 kb on + strand, within Atu8125 at 445.874 kb on - strand, within Atu8125 at 445.879 kb on - strand, within Atu8125 at 445.889 kb on + strand, within Atu8125 at 445.907 kb on + strand, within Atu8125 at 445.934 kb on + strand, within Atu8125 at 445.939 kb on + strand, within Atu8125 at 445.947 kb on - strand, within Atu8125 at 445.969 kb on + strand, within Atu8125 at 445.977 kb on - strand, within Atu8125 at 445.979 kb on - strand, within Atu8125 at 445.993 kb on - strand, within Atu8125 at 446.068 kb on - strand at 446.126 kb on + strand at 446.126 kb on + strand at 446.126 kb on + strand at 446.134 kb on - strand at 446.153 kb on + strand at 446.165 kb on - strand at 446.193 kb on - strand at 446.217 kb on - strand at 446.224 kb on + strand at 446.288 kb on - strand, within Atu8083 at 446.303 kb on + strand, within Atu8083 at 446.309 kb on + strand, within Atu8083 at 446.333 kb on - strand, within Atu8083 at 446.353 kb on + strand, within Atu8083 at 446.466 kb on - strand, within Atu8083 at 446.509 kb on - strand, within Atu8083 at 446.510 kb on + strand, within Atu8083 at 446.540 kb on - strand, within Atu8083 at 446.544 kb on + strand, within Atu8083 at 446.550 kb on - strand, within Atu8083 at 446.554 kb on + strand, within Atu8083 at 446.554 kb on + strand, within Atu8083 at 446.554 kb on + strand, within Atu8083 at 446.554 kb on + strand, within Atu8083 at 446.589 kb on + strand, within Atu8083 at 446.607 kb on - strand, within Atu8083 at 446.607 kb on - strand, within Atu8083 at 446.664 kb on - strand, within Atu8083 at 446.685 kb on + strand, within Atu8083 at 446.806 kb on + strand, within Atu8083 at 446.806 kb on + strand, within Atu8083 at 446.823 kb on + strand, within Atu8083 at 446.849 kb on + strand, within Atu8083 at 446.856 kb on + strand, within Atu8083 at 446.863 kb on - strand, within Atu8083 at 446.864 kb on - strand, within Atu8083 at 446.869 kb on - strand, within Atu8083 at 446.949 kb on + strand at 446.949 kb on + strand at 446.949 kb on + strand at 446.957 kb on - strand at 446.957 kb on - strand at 446.957 kb on - strand at 446.957 kb on - strand at 447.003 kb on - strand at 447.054 kb on - strand at 447.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyrogallol 0.5 mM remove 444,649 + +1.0 444,656 + +1.5 444,770 - +1.7 444,776 + +1.6 444,922 + Atu0450 0.35 +1.8 444,932 + Atu0450 0.36 +1.2 444,935 - Atu0450 0.37 +1.2 444,940 - Atu0450 0.38 +1.8 444,940 - Atu0450 0.38 +1.4 444,967 + Atu0450 0.43 +0.4 444,970 - Atu0450 0.43 +1.4 444,977 + Atu0450 0.44 +2.3 444,993 - Atu0450 0.47 +1.3 445,010 + Atu0450 0.50 +2.1 445,010 + Atu0450 0.50 +1.3 445,018 - Atu0450 0.51 +1.3 445,092 - Atu0450 0.65 +0.1 445,099 - Atu0450 0.66 +1.3 445,101 + Atu0450 0.66 +2.1 445,103 + Atu0450 0.66 +1.6 445,111 - Atu0450 0.68 +1.3 445,150 - Atu0450 0.75 +1.1 445,224 - Atu0450 0.88 +1.5 445,227 - Atu0450 0.88 +1.1 445,265 - +1.5 445,267 + +1.6 445,275 - +1.4 445,292 + +1.9 445,300 - +1.3 445,300 - +1.2 445,305 - +1.7 445,443 + +0.5 445,481 + +0.8 445,508 + +0.8 445,571 + +0.3 445,624 + Atu8125 0.15 +0.5 445,745 + Atu8125 0.36 +0.8 445,871 + Atu8125 0.59 +1.0 445,874 - Atu8125 0.59 +0.7 445,879 - Atu8125 0.60 +0.4 445,889 + Atu8125 0.62 +0.1 445,907 + Atu8125 0.65 +1.0 445,934 + Atu8125 0.70 +0.7 445,939 + Atu8125 0.71 +1.0 445,947 - Atu8125 0.72 +0.5 445,969 + Atu8125 0.76 +0.9 445,977 - Atu8125 0.77 +0.6 445,979 - Atu8125 0.78 +0.7 445,993 - Atu8125 0.80 +0.4 446,068 - +0.7 446,126 + +0.1 446,126 + -0.3 446,126 + +0.6 446,134 - +0.6 446,153 + +0.4 446,165 - +0.3 446,193 - +0.5 446,217 - +0.8 446,224 + +1.0 446,288 - Atu8083 0.12 +0.6 446,303 + Atu8083 0.14 +0.6 446,309 + Atu8083 0.15 +0.4 446,333 - Atu8083 0.18 +0.6 446,353 + Atu8083 0.20 +0.9 446,466 - Atu8083 0.34 +0.7 446,509 - Atu8083 0.39 +1.3 446,510 + Atu8083 0.39 +0.5 446,540 - Atu8083 0.43 +0.5 446,544 + Atu8083 0.44 +0.2 446,550 - Atu8083 0.44 +0.6 446,554 + Atu8083 0.45 +0.6 446,554 + Atu8083 0.45 +0.4 446,554 + Atu8083 0.45 +0.7 446,554 + Atu8083 0.45 +0.7 446,589 + Atu8083 0.49 +0.1 446,607 - Atu8083 0.51 +0.7 446,607 - Atu8083 0.51 +1.0 446,664 - Atu8083 0.58 +0.3 446,685 + Atu8083 0.61 +1.0 446,806 + Atu8083 0.76 +0.1 446,806 + Atu8083 0.76 +0.7 446,823 + Atu8083 0.78 +0.4 446,849 + Atu8083 0.81 +1.2 446,856 + Atu8083 0.82 +0.8 446,863 - Atu8083 0.83 +0.9 446,864 - Atu8083 0.83 +0.3 446,869 - Atu8083 0.84 +0.8 446,949 + +0.6 446,949 + +0.5 446,949 + +0.9 446,957 - +0.6 446,957 - +0.9 446,957 - +0.9 446,957 - +0.6 447,003 - +0.9 447,054 - +0.6 447,087 + +0.4
Or see this region's nucleotide sequence