Experiment: Pyrogallol 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3395 and Atu3396 are separated by 71 nucleotides Atu3396 and Atu3397 are separated by 443 nucleotides
Atu3395: Atu3395 - iron (III ABC transporter permease ABC transporter permease, at 438,910 to 439,863
Atu3395
Atu3396: Atu3396 - ABC transporter substrate-binding protein, at 439,935 to 440,966
Atu3396
Atu3397: Atu3397 - hypothetical protein, at 441,410 to 442,285
Atu3397
Position (kb) 439
440
441 Strain fitness (log2 ratio) -1
0
1
2 at 438.988 kb on - strand at 439.080 kb on - strand, within Atu3395 at 439.083 kb on + strand, within Atu3395 at 439.089 kb on + strand, within Atu3395 at 439.187 kb on + strand, within Atu3395 at 439.207 kb on - strand, within Atu3395 at 439.258 kb on + strand, within Atu3395 at 439.274 kb on + strand, within Atu3395 at 439.377 kb on - strand, within Atu3395 at 439.480 kb on + strand, within Atu3395 at 439.507 kb on - strand, within Atu3395 at 439.682 kb on - strand, within Atu3395 at 439.742 kb on + strand, within Atu3395 at 439.742 kb on - strand, within Atu3395 at 439.754 kb on + strand, within Atu3395 at 439.802 kb on + strand at 439.991 kb on - strand at 440.053 kb on - strand, within Atu3396 at 440.242 kb on + strand, within Atu3396 at 440.354 kb on - strand, within Atu3396 at 440.358 kb on - strand, within Atu3396 at 440.358 kb on - strand, within Atu3396 at 440.358 kb on - strand, within Atu3396 at 440.394 kb on + strand, within Atu3396 at 440.467 kb on - strand, within Atu3396 at 440.486 kb on + strand, within Atu3396 at 440.494 kb on - strand, within Atu3396 at 440.531 kb on + strand, within Atu3396 at 440.628 kb on - strand, within Atu3396 at 440.635 kb on - strand, within Atu3396 at 440.635 kb on - strand, within Atu3396 at 440.694 kb on - strand, within Atu3396 at 440.710 kb on - strand, within Atu3396 at 440.710 kb on - strand, within Atu3396 at 440.728 kb on + strand, within Atu3396 at 440.795 kb on + strand, within Atu3396 at 440.801 kb on + strand, within Atu3396 at 440.823 kb on - strand, within Atu3396 at 440.869 kb on - strand at 440.908 kb on + strand at 441.038 kb on + strand at 441.056 kb on - strand at 441.059 kb on - strand at 441.170 kb on + strand at 441.200 kb on + strand at 441.225 kb on - strand at 441.308 kb on + strand at 441.421 kb on - strand at 441.423 kb on + strand at 441.565 kb on - strand, within Atu3397 at 441.571 kb on + strand, within Atu3397 at 441.708 kb on + strand, within Atu3397 at 441.726 kb on - strand, within Atu3397 at 441.729 kb on + strand, within Atu3397 at 441.788 kb on + strand, within Atu3397 at 441.796 kb on - strand, within Atu3397 at 441.796 kb on - strand, within Atu3397 at 441.860 kb on - strand, within Atu3397 at 441.919 kb on + strand, within Atu3397 at 441.926 kb on - strand, within Atu3397 at 441.965 kb on - strand, within Atu3397
Per-strain Table
Position Strand Gene LocusTag Fraction Pyrogallol 0.5 mM remove 438,988 - +0.2 439,080 - Atu3395 0.18 +0.4 439,083 + Atu3395 0.18 +1.1 439,089 + Atu3395 0.19 +0.2 439,187 + Atu3395 0.29 -1.1 439,207 - Atu3395 0.31 +0.2 439,258 + Atu3395 0.36 -1.4 439,274 + Atu3395 0.38 +0.2 439,377 - Atu3395 0.49 +0.1 439,480 + Atu3395 0.60 +0.8 439,507 - Atu3395 0.63 +0.1 439,682 - Atu3395 0.81 +0.2 439,742 + Atu3395 0.87 +1.9 439,742 - Atu3395 0.87 +0.5 439,754 + Atu3395 0.88 -0.5 439,802 + +0.0 439,991 - -0.2 440,053 - Atu3396 0.11 +0.5 440,242 + Atu3396 0.30 +0.6 440,354 - Atu3396 0.41 +0.3 440,358 - Atu3396 0.41 +0.3 440,358 - Atu3396 0.41 +0.1 440,358 - Atu3396 0.41 +0.7 440,394 + Atu3396 0.44 +0.4 440,467 - Atu3396 0.52 +0.7 440,486 + Atu3396 0.53 -0.1 440,494 - Atu3396 0.54 -0.7 440,531 + Atu3396 0.58 +0.2 440,628 - Atu3396 0.67 -0.2 440,635 - Atu3396 0.68 +1.4 440,635 - Atu3396 0.68 -0.4 440,694 - Atu3396 0.74 +0.3 440,710 - Atu3396 0.75 +0.6 440,710 - Atu3396 0.75 +0.5 440,728 + Atu3396 0.77 +0.5 440,795 + Atu3396 0.83 +0.5 440,801 + Atu3396 0.84 +0.4 440,823 - Atu3396 0.86 +1.8 440,869 - -0.8 440,908 + -0.3 441,038 + -0.4 441,056 - -0.3 441,059 - -0.9 441,170 + +0.4 441,200 + +0.1 441,225 - +1.7 441,308 + +0.7 441,421 - +0.1 441,423 + +0.7 441,565 - Atu3397 0.18 +0.1 441,571 + Atu3397 0.18 +0.4 441,708 + Atu3397 0.34 +0.1 441,726 - Atu3397 0.36 -0.0 441,729 + Atu3397 0.36 +0.5 441,788 + Atu3397 0.43 +1.0 441,796 - Atu3397 0.44 +1.2 441,796 - Atu3397 0.44 -0.2 441,860 - Atu3397 0.51 +0.5 441,919 + Atu3397 0.58 -0.5 441,926 - Atu3397 0.59 +0.2 441,965 - Atu3397 0.63 -0.0
Or see this region's nucleotide sequence