Experiment: Pyrogallol 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8094 and Atu3366 are separated by 394 nucleotides Atu3366 and Atu3367 are separated by 32 nucleotides Atu3367 and Atu3368 are separated by 388 nucleotides
Atu8094: Atu8094 - hypothetical protein, at 405,343 to 405,588
Atu8094
Atu3366: Atu3366 - tripartite ATP-independent periplasmic transporter DctQ, at 405,983 to 406,522
Atu3366
Atu3367: Atu3367 - TRAP dicarboxylate transporter subunit DctM, at 406,555 to 408,024
Atu3367
Atu3368: Atu3368 - periplasmic mannitol-binding protein, at 408,413 to 409,510
Atu3368
Position (kb) 406
407
408
409 Strain fitness (log2 ratio) -1
0
1
2 at 405.652 kb on - strand at 405.655 kb on + strand at 405.696 kb on - strand at 405.701 kb on + strand at 405.730 kb on - strand at 405.747 kb on + strand at 405.894 kb on + strand at 405.902 kb on - strand at 405.981 kb on - strand at 406.036 kb on + strand at 406.063 kb on + strand, within Atu3366 at 406.071 kb on - strand, within Atu3366 at 406.257 kb on + strand, within Atu3366 at 406.318 kb on + strand, within Atu3366 at 406.318 kb on + strand, within Atu3366 at 406.318 kb on + strand, within Atu3366 at 406.326 kb on - strand, within Atu3366 at 406.326 kb on - strand, within Atu3366 at 406.326 kb on - strand, within Atu3366 at 406.339 kb on + strand, within Atu3366 at 406.339 kb on + strand, within Atu3366 at 406.341 kb on + strand, within Atu3366 at 406.347 kb on - strand, within Atu3366 at 406.453 kb on + strand, within Atu3366 at 406.519 kb on - strand at 406.792 kb on - strand, within Atu3367 at 406.989 kb on + strand, within Atu3367 at 407.045 kb on + strand, within Atu3367 at 407.053 kb on - strand, within Atu3367 at 407.125 kb on - strand, within Atu3367 at 407.289 kb on + strand, within Atu3367 at 407.373 kb on + strand, within Atu3367 at 407.409 kb on + strand, within Atu3367 at 407.672 kb on + strand, within Atu3367 at 407.680 kb on - strand, within Atu3367 at 407.703 kb on + strand, within Atu3367 at 407.739 kb on + strand, within Atu3367 at 407.746 kb on - strand, within Atu3367 at 407.747 kb on - strand, within Atu3367 at 407.787 kb on + strand, within Atu3367 at 407.802 kb on + strand, within Atu3367 at 407.814 kb on - strand, within Atu3367 at 407.820 kb on + strand, within Atu3367 at 407.828 kb on - strand, within Atu3367 at 407.930 kb on + strand at 408.086 kb on - strand at 408.173 kb on + strand at 408.173 kb on + strand at 408.173 kb on + strand at 408.181 kb on - strand at 408.206 kb on + strand at 408.211 kb on + strand at 408.291 kb on + strand at 408.299 kb on - strand at 408.344 kb on - strand at 408.419 kb on - strand at 408.509 kb on - strand at 408.589 kb on - strand, within Atu3368 at 408.810 kb on + strand, within Atu3368 at 408.818 kb on - strand, within Atu3368 at 408.885 kb on - strand, within Atu3368 at 408.889 kb on - strand, within Atu3368
Per-strain Table
Position Strand Gene LocusTag Fraction Pyrogallol 0.5 mM remove 405,652 - +0.3 405,655 + -0.4 405,696 - +0.3 405,701 + +0.5 405,730 - -0.8 405,747 + -0.5 405,894 + -0.2 405,902 - +1.4 405,981 - +0.2 406,036 + +1.0 406,063 + Atu3366 0.15 -1.5 406,071 - Atu3366 0.16 -0.4 406,257 + Atu3366 0.51 -0.1 406,318 + Atu3366 0.62 +0.1 406,318 + Atu3366 0.62 -1.2 406,318 + Atu3366 0.62 +0.6 406,326 - Atu3366 0.64 +0.2 406,326 - Atu3366 0.64 +0.2 406,326 - Atu3366 0.64 +1.1 406,339 + Atu3366 0.66 -0.1 406,339 + Atu3366 0.66 -0.5 406,341 + Atu3366 0.66 +0.4 406,347 - Atu3366 0.67 -0.3 406,453 + Atu3366 0.87 -0.5 406,519 - +1.7 406,792 - Atu3367 0.16 +0.3 406,989 + Atu3367 0.30 -0.1 407,045 + Atu3367 0.33 -0.4 407,053 - Atu3367 0.34 +0.9 407,125 - Atu3367 0.39 +0.4 407,289 + Atu3367 0.50 +0.3 407,373 + Atu3367 0.56 +0.3 407,409 + Atu3367 0.58 +1.2 407,672 + Atu3367 0.76 +0.6 407,680 - Atu3367 0.77 +0.5 407,703 + Atu3367 0.78 +0.4 407,739 + Atu3367 0.81 +0.5 407,746 - Atu3367 0.81 +0.3 407,747 - Atu3367 0.81 -0.3 407,787 + Atu3367 0.84 -0.1 407,802 + Atu3367 0.85 +1.2 407,814 - Atu3367 0.86 -0.9 407,820 + Atu3367 0.86 +1.5 407,828 - Atu3367 0.87 +0.1 407,930 + +0.4 408,086 - +0.0 408,173 + -0.6 408,173 + +0.9 408,173 + -0.6 408,181 - +0.4 408,206 + +0.2 408,211 + -1.0 408,291 + -0.0 408,299 - -0.5 408,344 - -0.9 408,419 - +0.9 408,509 - +0.3 408,589 - Atu3368 0.16 +1.3 408,810 + Atu3368 0.36 -0.3 408,818 - Atu3368 0.37 -1.7 408,885 - Atu3368 0.43 +2.1 408,889 - Atu3368 0.43 -0.1
Or see this region's nucleotide sequence