Experiment: Pyrogallol 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0836 and Atu0837 are separated by 84 nucleotides Atu0837 and Atu0838 are separated by 147 nucleotides Atu0838 and Atu0839 are separated by 310 nucleotides
Atu0836: Atu0836 - Glutathione-S-transferase, at 835,495 to 836,154
Atu0836
Atu0837: Atu0837 - transcriptional regulator, MarR family, at 836,239 to 836,754
Atu0837
Atu0838: Atu0838 - MFS permease, at 836,902 to 838,425
Atu0838
Atu0839: Atu0839 - hypothetical protein, at 838,736 to 839,731
Atu0839
Position (kb) 836
837
838
839 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 835.978 kb on - strand, within Atu0836 at 836.017 kb on - strand, within Atu0836 at 836.017 kb on - strand, within Atu0836 at 836.166 kb on + strand at 836.240 kb on - strand at 836.479 kb on - strand, within Atu0837 at 836.489 kb on - strand, within Atu0837 at 836.525 kb on + strand, within Atu0837 at 836.534 kb on - strand, within Atu0837 at 836.613 kb on + strand, within Atu0837 at 836.621 kb on - strand, within Atu0837 at 836.753 kb on + strand at 836.801 kb on + strand at 836.899 kb on + strand at 837.035 kb on + strand at 837.083 kb on + strand, within Atu0838 at 837.185 kb on + strand, within Atu0838 at 837.313 kb on - strand, within Atu0838 at 837.333 kb on - strand, within Atu0838 at 837.334 kb on - strand, within Atu0838 at 837.335 kb on + strand, within Atu0838 at 837.451 kb on - strand, within Atu0838 at 837.451 kb on - strand, within Atu0838 at 837.451 kb on - strand, within Atu0838 at 837.451 kb on - strand, within Atu0838 at 837.477 kb on + strand, within Atu0838 at 837.499 kb on - strand, within Atu0838 at 837.558 kb on + strand, within Atu0838 at 837.566 kb on - strand, within Atu0838 at 837.609 kb on - strand, within Atu0838 at 837.826 kb on - strand, within Atu0838 at 837.839 kb on - strand, within Atu0838 at 837.906 kb on + strand, within Atu0838 at 837.906 kb on + strand, within Atu0838 at 837.960 kb on - strand, within Atu0838 at 838.020 kb on + strand, within Atu0838 at 838.028 kb on - strand, within Atu0838 at 838.063 kb on + strand, within Atu0838 at 838.069 kb on - strand, within Atu0838 at 838.073 kb on - strand, within Atu0838 at 838.254 kb on + strand, within Atu0838 at 838.262 kb on - strand, within Atu0838 at 838.279 kb on + strand at 838.444 kb on + strand at 838.463 kb on - strand at 838.594 kb on + strand at 838.594 kb on + strand at 838.712 kb on - strand at 838.827 kb on - strand at 838.843 kb on + strand, within Atu0839 at 838.944 kb on + strand, within Atu0839 at 838.952 kb on - strand, within Atu0839 at 838.956 kb on + strand, within Atu0839 at 838.956 kb on - strand, within Atu0839 at 838.997 kb on + strand, within Atu0839 at 839.000 kb on - strand, within Atu0839 at 839.011 kb on - strand, within Atu0839 at 839.090 kb on + strand, within Atu0839 at 839.098 kb on + strand, within Atu0839 at 839.098 kb on + strand, within Atu0839 at 839.106 kb on - strand, within Atu0839 at 839.106 kb on - strand, within Atu0839 at 839.139 kb on + strand, within Atu0839 at 839.192 kb on + strand, within Atu0839 at 839.202 kb on + strand, within Atu0839 at 839.212 kb on - strand, within Atu0839 at 839.238 kb on + strand, within Atu0839 at 839.382 kb on - strand, within Atu0839 at 839.421 kb on - strand, within Atu0839 at 839.421 kb on - strand, within Atu0839
Per-strain Table
Position Strand Gene LocusTag Fraction Pyrogallol 0.5 mM remove 835,978 - Atu0836 0.73 +0.4 836,017 - Atu0836 0.79 -0.3 836,017 - Atu0836 0.79 -1.0 836,166 + -0.1 836,240 - -0.1 836,479 - Atu0837 0.47 -2.7 836,489 - Atu0837 0.48 -4.6 836,525 + Atu0837 0.55 -1.5 836,534 - Atu0837 0.57 -4.3 836,613 + Atu0837 0.72 -4.3 836,621 - Atu0837 0.74 -3.4 836,753 + -1.5 836,801 + +0.3 836,899 + -0.7 837,035 + +0.2 837,083 + Atu0838 0.12 +0.6 837,185 + Atu0838 0.19 -0.5 837,313 - Atu0838 0.27 -0.5 837,333 - Atu0838 0.28 -0.7 837,334 - Atu0838 0.28 -0.3 837,335 + Atu0838 0.28 -0.7 837,451 - Atu0838 0.36 -0.6 837,451 - Atu0838 0.36 -0.8 837,451 - Atu0838 0.36 -1.1 837,451 - Atu0838 0.36 -0.7 837,477 + Atu0838 0.38 +0.0 837,499 - Atu0838 0.39 -0.3 837,558 + Atu0838 0.43 -0.9 837,566 - Atu0838 0.44 -2.4 837,609 - Atu0838 0.46 -1.5 837,826 - Atu0838 0.61 -1.5 837,839 - Atu0838 0.61 -0.9 837,906 + Atu0838 0.66 +0.3 837,906 + Atu0838 0.66 -1.5 837,960 - Atu0838 0.69 -0.9 838,020 + Atu0838 0.73 -0.4 838,028 - Atu0838 0.74 -0.5 838,063 + Atu0838 0.76 +0.6 838,069 - Atu0838 0.77 -0.7 838,073 - Atu0838 0.77 -0.3 838,254 + Atu0838 0.89 -0.5 838,262 - Atu0838 0.89 +0.5 838,279 + -1.0 838,444 + -1.4 838,463 - -0.6 838,594 + +0.5 838,594 + -0.2 838,712 - -0.4 838,827 - +0.1 838,843 + Atu0839 0.11 -0.1 838,944 + Atu0839 0.21 +0.4 838,952 - Atu0839 0.22 -0.1 838,956 + Atu0839 0.22 -0.4 838,956 - Atu0839 0.22 +1.0 838,997 + Atu0839 0.26 +0.1 839,000 - Atu0839 0.27 -0.2 839,011 - Atu0839 0.28 -0.2 839,090 + Atu0839 0.36 -0.1 839,098 + Atu0839 0.36 -0.0 839,098 + Atu0839 0.36 -0.5 839,106 - Atu0839 0.37 -0.8 839,106 - Atu0839 0.37 -0.4 839,139 + Atu0839 0.40 -0.9 839,192 + Atu0839 0.46 -0.2 839,202 + Atu0839 0.47 +0.4 839,212 - Atu0839 0.48 -0.7 839,238 + Atu0839 0.50 -0.3 839,382 - Atu0839 0.65 +0.3 839,421 - Atu0839 0.69 -0.4 839,421 - Atu0839 0.69 -1.0
Or see this region's nucleotide sequence