Experiment: Pyrogallol 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0458 and Atu8128 are separated by 33 nucleotides Atu8128 and Atu0460 are separated by 4 nucleotides Atu0460 and Atu0461 are separated by 2 nucleotides Atu0461 and Atu0462 are separated by 43 nucleotides Atu0462 and Atu0463 overlap by 25 nucleotides
Atu0458: Atu0458 - hypothetical protein, at 454,247 to 454,615
Atu0458
Atu8128: Atu8128 - putative bacteriophage P2 tail protein, at 454,649 to 455,113
Atu8128
Atu0460: Atu0460 - hypothetical protein, at 455,118 to 455,330
Atu0460
Atu0461: Atu0461 - hypothetical protein, at 455,333 to 456,493
Atu0461
Atu0462: Atu0462 - endolysin, at 456,537 to 457,178
Atu0462
Atu0463: Atu0463 - hypothetical protein, at 457,154 to 457,471
Atu0463
Position (kb) 455
456
457 Strain fitness (log2 ratio) -1
0
1
2 at 454.406 kb on - strand, within Atu0458 at 454.412 kb on - strand, within Atu0458 at 454.481 kb on - strand, within Atu0458 at 454.534 kb on - strand, within Atu0458 at 454.609 kb on + strand at 454.609 kb on + strand at 454.654 kb on - strand at 454.654 kb on - strand at 454.662 kb on + strand at 454.702 kb on - strand, within Atu8128 at 454.726 kb on - strand, within Atu8128 at 454.737 kb on + strand, within Atu8128 at 454.748 kb on + strand, within Atu8128 at 454.775 kb on - strand, within Atu8128 at 454.780 kb on + strand, within Atu8128 at 454.780 kb on + strand, within Atu8128 at 454.814 kb on + strand, within Atu8128 at 454.856 kb on - strand, within Atu8128 at 454.866 kb on - strand, within Atu8128 at 454.875 kb on - strand, within Atu8128 at 454.927 kb on + strand, within Atu8128 at 454.953 kb on - strand, within Atu8128 at 454.995 kb on + strand, within Atu8128 at 455.001 kb on - strand, within Atu8128 at 455.016 kb on + strand, within Atu8128 at 455.085 kb on + strand at 455.137 kb on - strand at 455.139 kb on + strand at 455.144 kb on + strand, within Atu0460 at 455.147 kb on - strand, within Atu0460 at 455.152 kb on + strand, within Atu0460 at 455.205 kb on + strand, within Atu0460 at 455.237 kb on + strand, within Atu0460 at 455.242 kb on + strand, within Atu0460 at 455.260 kb on + strand, within Atu0460 at 455.286 kb on + strand, within Atu0460 at 455.329 kb on + strand at 455.411 kb on - strand at 455.417 kb on + strand at 455.484 kb on - strand, within Atu0461 at 455.535 kb on + strand, within Atu0461 at 455.623 kb on - strand, within Atu0461 at 455.623 kb on - strand, within Atu0461 at 455.624 kb on - strand, within Atu0461 at 455.631 kb on + strand, within Atu0461 at 455.690 kb on - strand, within Atu0461 at 455.723 kb on - strand, within Atu0461 at 455.757 kb on - strand, within Atu0461 at 455.871 kb on + strand, within Atu0461 at 456.013 kb on + strand, within Atu0461 at 456.013 kb on + strand, within Atu0461 at 456.030 kb on - strand, within Atu0461 at 456.069 kb on - strand, within Atu0461 at 456.113 kb on + strand, within Atu0461 at 456.116 kb on - strand, within Atu0461 at 456.116 kb on - strand, within Atu0461 at 456.126 kb on - strand, within Atu0461 at 456.126 kb on - strand, within Atu0461 at 456.126 kb on - strand, within Atu0461 at 456.126 kb on - strand, within Atu0461 at 456.159 kb on + strand, within Atu0461 at 456.175 kb on - strand, within Atu0461 at 456.241 kb on + strand, within Atu0461 at 456.241 kb on + strand, within Atu0461 at 456.250 kb on + strand, within Atu0461 at 456.310 kb on - strand, within Atu0461 at 456.372 kb on + strand, within Atu0461 at 456.395 kb on - strand at 456.410 kb on + strand at 456.418 kb on - strand at 456.425 kb on + strand at 456.562 kb on + strand at 456.562 kb on + strand at 456.570 kb on - strand at 456.586 kb on + strand at 456.601 kb on + strand at 456.606 kb on + strand, within Atu0462 at 456.609 kb on - strand, within Atu0462 at 456.618 kb on + strand, within Atu0462 at 456.647 kb on + strand, within Atu0462 at 456.655 kb on - strand, within Atu0462 at 456.655 kb on - strand, within Atu0462 at 456.688 kb on - strand, within Atu0462 at 456.708 kb on + strand, within Atu0462 at 456.716 kb on - strand, within Atu0462 at 456.731 kb on - strand, within Atu0462 at 456.740 kb on + strand, within Atu0462 at 456.789 kb on + strand, within Atu0462 at 456.797 kb on - strand, within Atu0462 at 456.804 kb on + strand, within Atu0462 at 456.886 kb on + strand, within Atu0462 at 456.964 kb on - strand, within Atu0462 at 456.989 kb on + strand, within Atu0462 at 456.991 kb on - strand, within Atu0462 at 457.019 kb on + strand, within Atu0462 at 457.025 kb on - strand, within Atu0462 at 457.050 kb on - strand, within Atu0462 at 457.050 kb on - strand, within Atu0462 at 457.073 kb on - strand, within Atu0462 at 457.073 kb on - strand, within Atu0462 at 457.083 kb on - strand, within Atu0462 at 457.156 kb on + strand at 457.201 kb on + strand, within Atu0463 at 457.209 kb on - strand, within Atu0463 at 457.306 kb on + strand, within Atu0463
Per-strain Table
Position Strand Gene LocusTag Fraction Pyrogallol 0.5 mM remove 454,406 - Atu0458 0.43 +0.8 454,412 - Atu0458 0.45 +0.9 454,481 - Atu0458 0.63 +1.0 454,534 - Atu0458 0.78 +0.5 454,609 + +0.4 454,609 + +0.5 454,654 - +0.9 454,654 - +1.0 454,662 + +0.9 454,702 - Atu8128 0.11 +0.7 454,726 - Atu8128 0.17 -0.1 454,737 + Atu8128 0.19 +0.4 454,748 + Atu8128 0.21 +0.5 454,775 - Atu8128 0.27 +0.7 454,780 + Atu8128 0.28 +1.2 454,780 + Atu8128 0.28 +0.8 454,814 + Atu8128 0.35 -0.6 454,856 - Atu8128 0.45 +0.9 454,866 - Atu8128 0.47 +0.9 454,875 - Atu8128 0.49 +0.5 454,927 + Atu8128 0.60 +0.6 454,953 - Atu8128 0.65 +0.7 454,995 + Atu8128 0.74 +0.9 455,001 - Atu8128 0.76 +0.9 455,016 + Atu8128 0.79 +0.9 455,085 + +0.0 455,137 - +0.9 455,139 + +0.0 455,144 + Atu0460 0.12 +1.0 455,147 - Atu0460 0.14 +0.7 455,152 + Atu0460 0.16 +0.5 455,205 + Atu0460 0.41 +0.7 455,237 + Atu0460 0.56 +0.7 455,242 + Atu0460 0.58 +1.0 455,260 + Atu0460 0.67 +1.0 455,286 + Atu0460 0.79 +0.5 455,329 + +0.6 455,411 - -0.1 455,417 + +0.5 455,484 - Atu0461 0.13 +1.3 455,535 + Atu0461 0.17 +0.3 455,623 - Atu0461 0.25 +0.5 455,623 - Atu0461 0.25 -0.3 455,624 - Atu0461 0.25 +1.1 455,631 + Atu0461 0.26 +0.5 455,690 - Atu0461 0.31 +0.7 455,723 - Atu0461 0.34 +1.3 455,757 - Atu0461 0.37 +1.6 455,871 + Atu0461 0.46 +0.9 456,013 + Atu0461 0.59 +0.8 456,013 + Atu0461 0.59 +1.0 456,030 - Atu0461 0.60 -0.2 456,069 - Atu0461 0.63 +0.8 456,113 + Atu0461 0.67 +1.1 456,116 - Atu0461 0.67 +0.9 456,116 - Atu0461 0.67 +0.8 456,126 - Atu0461 0.68 +1.7 456,126 - Atu0461 0.68 +1.2 456,126 - Atu0461 0.68 +1.2 456,126 - Atu0461 0.68 +1.2 456,159 + Atu0461 0.71 +0.9 456,175 - Atu0461 0.73 +0.9 456,241 + Atu0461 0.78 +1.0 456,241 + Atu0461 0.78 +0.5 456,250 + Atu0461 0.79 +1.0 456,310 - Atu0461 0.84 +0.7 456,372 + Atu0461 0.89 +0.6 456,395 - +0.9 456,410 + +1.1 456,418 - +0.9 456,425 + +0.4 456,562 + +1.2 456,562 + +0.4 456,570 - +1.1 456,586 + +1.0 456,601 + +1.4 456,606 + Atu0462 0.11 +1.0 456,609 - Atu0462 0.11 +1.2 456,618 + Atu0462 0.13 +1.6 456,647 + Atu0462 0.17 +1.4 456,655 - Atu0462 0.18 +1.3 456,655 - Atu0462 0.18 +1.4 456,688 - Atu0462 0.24 +1.0 456,708 + Atu0462 0.27 +2.4 456,716 - Atu0462 0.28 +1.7 456,731 - Atu0462 0.30 +1.2 456,740 + Atu0462 0.32 +0.5 456,789 + Atu0462 0.39 +1.2 456,797 - Atu0462 0.40 +2.0 456,804 + Atu0462 0.42 +1.8 456,886 + Atu0462 0.54 +0.4 456,964 - Atu0462 0.67 +0.9 456,989 + Atu0462 0.70 +0.5 456,991 - Atu0462 0.71 -0.1 457,019 + Atu0462 0.75 +0.5 457,025 - Atu0462 0.76 +0.4 457,050 - Atu0462 0.80 +1.1 457,050 - Atu0462 0.80 +0.6 457,073 - Atu0462 0.83 +1.3 457,073 - Atu0462 0.83 +0.5 457,083 - Atu0462 0.85 +0.9 457,156 + +0.2 457,201 + Atu0463 0.15 +0.8 457,209 - Atu0463 0.17 +0.7 457,306 + Atu0463 0.48 +1.0
Or see this region's nucleotide sequence