Strain Fitness in Agrobacterium fabrum C58 around Atu0452

Experiment: Pyrogallol 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu8083 and Atu0452 are separated by 140 nucleotidesAtu0452 and Atu0453 are separated by 264 nucleotides Atu8083: Atu8083 - hypothetical protein, at 446,189 to 447,001 Atu8083 Atu0452: Atu0452 - hypothetical protein, at 447,142 to 447,747 Atu0452 Atu0453: Atu0453 - hypothetical protein, at 448,012 to 448,758 Atu0453 Position (kb) 447 448Strain fitness (log2 ratio) -1 0 1 2at 446.153 kb on + strandat 446.165 kb on - strandat 446.193 kb on - strandat 446.217 kb on - strandat 446.224 kb on + strandat 446.288 kb on - strand, within Atu8083at 446.303 kb on + strand, within Atu8083at 446.309 kb on + strand, within Atu8083at 446.333 kb on - strand, within Atu8083at 446.353 kb on + strand, within Atu8083at 446.466 kb on - strand, within Atu8083at 446.509 kb on - strand, within Atu8083at 446.510 kb on + strand, within Atu8083at 446.540 kb on - strand, within Atu8083at 446.544 kb on + strand, within Atu8083at 446.550 kb on - strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.589 kb on + strand, within Atu8083at 446.607 kb on - strand, within Atu8083at 446.607 kb on - strand, within Atu8083at 446.664 kb on - strand, within Atu8083at 446.685 kb on + strand, within Atu8083at 446.806 kb on + strand, within Atu8083at 446.806 kb on + strand, within Atu8083at 446.823 kb on + strand, within Atu8083at 446.849 kb on + strand, within Atu8083at 446.856 kb on + strand, within Atu8083at 446.863 kb on - strand, within Atu8083at 446.864 kb on - strand, within Atu8083at 446.869 kb on - strand, within Atu8083at 446.949 kb on + strandat 446.949 kb on + strandat 446.949 kb on + strandat 446.957 kb on - strandat 446.957 kb on - strandat 446.957 kb on - strandat 446.957 kb on - strandat 447.003 kb on - strandat 447.054 kb on - strandat 447.087 kb on + strandat 447.109 kb on + strandat 447.127 kb on - strandat 447.208 kb on - strand, within Atu0452at 447.208 kb on - strand, within Atu0452at 447.246 kb on - strand, within Atu0452at 447.336 kb on - strand, within Atu0452at 447.400 kb on - strand, within Atu0452at 447.413 kb on + strand, within Atu0452at 447.459 kb on + strand, within Atu0452at 447.477 kb on + strand, within Atu0452at 447.477 kb on + strand, within Atu0452at 447.477 kb on + strand, within Atu0452at 447.485 kb on - strand, within Atu0452at 447.491 kb on - strand, within Atu0452at 447.496 kb on - strand, within Atu0452at 447.512 kb on + strand, within Atu0452at 447.512 kb on + strand, within Atu0452at 447.512 kb on + strand, within Atu0452at 447.512 kb on + strand, within Atu0452at 447.520 kb on - strand, within Atu0452at 447.525 kb on - strand, within Atu0452at 447.648 kb on - strand, within Atu0452at 447.658 kb on + strand, within Atu0452at 447.730 kb on - strandat 447.730 kb on - strandat 447.760 kb on + strandat 447.772 kb on + strandat 447.850 kb on + strandat 447.859 kb on + strandat 447.874 kb on - strandat 447.931 kb on + strandat 447.978 kb on - strandat 448.009 kb on + strandat 448.017 kb on - strandat 448.038 kb on + strandat 448.046 kb on - strandat 448.064 kb on - strandat 448.113 kb on + strand, within Atu0453at 448.118 kb on - strand, within Atu0453at 448.157 kb on - strand, within Atu0453at 448.164 kb on - strand, within Atu0453at 448.199 kb on + strand, within Atu0453at 448.199 kb on + strand, within Atu0453at 448.370 kb on - strand, within Atu0453at 448.376 kb on - strand, within Atu0453at 448.381 kb on + strand, within Atu0453at 448.381 kb on - strand, within Atu0453at 448.478 kb on - strand, within Atu0453at 448.522 kb on - strand, within Atu0453at 448.548 kb on + strand, within Atu0453at 448.661 kb on - strand, within Atu0453at 448.716 kb on + strandat 448.738 kb on + strandat 448.746 kb on - strandat 448.747 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyrogallol 0.5 mM
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446,153 + +0.4
446,165 - +0.3
446,193 - +0.5
446,217 - +0.8
446,224 + +1.0
446,288 - Atu8083 0.12 +0.6
446,303 + Atu8083 0.14 +0.6
446,309 + Atu8083 0.15 +0.4
446,333 - Atu8083 0.18 +0.6
446,353 + Atu8083 0.20 +0.9
446,466 - Atu8083 0.34 +0.7
446,509 - Atu8083 0.39 +1.3
446,510 + Atu8083 0.39 +0.5
446,540 - Atu8083 0.43 +0.5
446,544 + Atu8083 0.44 +0.2
446,550 - Atu8083 0.44 +0.6
446,554 + Atu8083 0.45 +0.6
446,554 + Atu8083 0.45 +0.4
446,554 + Atu8083 0.45 +0.7
446,554 + Atu8083 0.45 +0.7
446,589 + Atu8083 0.49 +0.1
446,607 - Atu8083 0.51 +0.7
446,607 - Atu8083 0.51 +1.0
446,664 - Atu8083 0.58 +0.3
446,685 + Atu8083 0.61 +1.0
446,806 + Atu8083 0.76 +0.1
446,806 + Atu8083 0.76 +0.7
446,823 + Atu8083 0.78 +0.4
446,849 + Atu8083 0.81 +1.2
446,856 + Atu8083 0.82 +0.8
446,863 - Atu8083 0.83 +0.9
446,864 - Atu8083 0.83 +0.3
446,869 - Atu8083 0.84 +0.8
446,949 + +0.6
446,949 + +0.5
446,949 + +0.9
446,957 - +0.6
446,957 - +0.9
446,957 - +0.9
446,957 - +0.6
447,003 - +0.9
447,054 - +0.6
447,087 + +0.4
447,109 + +0.5
447,127 - +0.7
447,208 - Atu0452 0.11 +0.9
447,208 - Atu0452 0.11 +1.4
447,246 - Atu0452 0.17 -0.0
447,336 - Atu0452 0.32 +0.1
447,400 - Atu0452 0.43 +0.9
447,413 + Atu0452 0.45 +0.5
447,459 + Atu0452 0.52 +0.5
447,477 + Atu0452 0.55 +0.6
447,477 + Atu0452 0.55 +0.3
447,477 + Atu0452 0.55 +0.8
447,485 - Atu0452 0.57 +0.5
447,491 - Atu0452 0.58 +0.8
447,496 - Atu0452 0.58 +1.1
447,512 + Atu0452 0.61 -0.2
447,512 + Atu0452 0.61 -0.3
447,512 + Atu0452 0.61 +0.8
447,512 + Atu0452 0.61 +0.5
447,520 - Atu0452 0.62 +0.7
447,525 - Atu0452 0.63 +0.3
447,648 - Atu0452 0.83 +1.0
447,658 + Atu0452 0.85 +0.4
447,730 - +1.2
447,730 - +1.4
447,760 + +0.8
447,772 + +0.4
447,850 + +0.6
447,859 + +0.6
447,874 - +2.1
447,931 + +0.9
447,978 - +0.5
448,009 + +1.4
448,017 - +0.4
448,038 + +0.4
448,046 - +0.3
448,064 - +0.5
448,113 + Atu0453 0.14 +0.2
448,118 - Atu0453 0.14 +1.0
448,157 - Atu0453 0.19 +0.5
448,164 - Atu0453 0.20 +0.6
448,199 + Atu0453 0.25 +0.8
448,199 + Atu0453 0.25 +0.5
448,370 - Atu0453 0.48 +0.2
448,376 - Atu0453 0.49 +0.4
448,381 + Atu0453 0.49 +0.4
448,381 - Atu0453 0.49 +0.6
448,478 - Atu0453 0.62 +1.2
448,522 - Atu0453 0.68 +0.8
448,548 + Atu0453 0.72 +0.4
448,661 - Atu0453 0.87 +0.5
448,716 + +0.3
448,738 + +0.4
448,746 - +1.0
448,747 + +0.1

Or see this region's nucleotide sequence