Experiment: Pyrogallol 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3134 and Atu3135 are separated by 29 nucleotides Atu3135 and Atu3136 are separated by 0 nucleotides Atu3136 and Atu3137 are separated by 70 nucleotides
Atu3134: Atu3134 - AraC family transcriptional regulator, at 142,157 to 143,083
Atu3134
Atu3135: Atu3135 - ABC transporter permease, at 143,113 to 144,393
Atu3135
Atu3136: Atu3136 - ABC transporter permease, at 144,394 to 144,915
Atu3136
Atu3137: Atu3137 - C4-dicarboxylate-binding protein, at 144,986 to 145,963
Atu3137
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1 at 142.209 kb on + strand at 142.217 kb on - strand at 142.289 kb on + strand, within Atu3134 at 142.296 kb on - strand, within Atu3134 at 142.297 kb on - strand, within Atu3134 at 142.299 kb on + strand, within Atu3134 at 142.307 kb on - strand, within Atu3134 at 142.352 kb on - strand, within Atu3134 at 142.379 kb on + strand, within Atu3134 at 142.548 kb on - strand, within Atu3134 at 142.564 kb on - strand, within Atu3134 at 142.609 kb on - strand, within Atu3134 at 142.614 kb on + strand, within Atu3134 at 142.696 kb on + strand, within Atu3134 at 142.704 kb on - strand, within Atu3134 at 142.742 kb on - strand, within Atu3134 at 142.962 kb on + strand, within Atu3134 at 143.039 kb on + strand at 143.175 kb on + strand at 143.264 kb on + strand, within Atu3135 at 143.414 kb on + strand, within Atu3135 at 143.513 kb on - strand, within Atu3135 at 143.656 kb on - strand, within Atu3135 at 143.656 kb on - strand, within Atu3135 at 143.756 kb on + strand, within Atu3135 at 143.787 kb on + strand, within Atu3135 at 143.809 kb on - strand, within Atu3135 at 143.809 kb on - strand, within Atu3135 at 143.933 kb on - strand, within Atu3135 at 143.990 kb on + strand, within Atu3135 at 143.998 kb on - strand, within Atu3135 at 144.039 kb on - strand, within Atu3135 at 144.104 kb on + strand, within Atu3135 at 144.112 kb on - strand, within Atu3135 at 144.114 kb on + strand, within Atu3135 at 144.114 kb on + strand, within Atu3135 at 144.197 kb on - strand, within Atu3135 at 144.300 kb on - strand at 144.361 kb on + strand at 144.369 kb on - strand at 144.430 kb on + strand at 144.537 kb on + strand, within Atu3136 at 144.586 kb on + strand, within Atu3136 at 144.605 kb on + strand, within Atu3136 at 144.623 kb on - strand, within Atu3136 at 144.705 kb on + strand, within Atu3136 at 144.731 kb on + strand, within Atu3136 at 144.759 kb on + strand, within Atu3136 at 144.845 kb on - strand, within Atu3136 at 145.052 kb on + strand at 145.060 kb on - strand at 145.156 kb on - strand, within Atu3137 at 145.218 kb on - strand, within Atu3137 at 145.280 kb on - strand, within Atu3137 at 145.374 kb on + strand, within Atu3137 at 145.374 kb on + strand, within Atu3137
Per-strain Table
Position Strand Gene LocusTag Fraction Pyrogallol 0.5 mM remove 142,209 + -0.4 142,217 - -1.1 142,289 + Atu3134 0.14 +0.2 142,296 - Atu3134 0.15 -0.1 142,297 - Atu3134 0.15 -0.3 142,299 + Atu3134 0.15 +0.1 142,307 - Atu3134 0.16 -0.0 142,352 - Atu3134 0.21 +0.2 142,379 + Atu3134 0.24 +0.2 142,548 - Atu3134 0.42 -0.1 142,564 - Atu3134 0.44 -0.6 142,609 - Atu3134 0.49 +0.0 142,614 + Atu3134 0.49 +0.3 142,696 + Atu3134 0.58 +0.2 142,704 - Atu3134 0.59 -0.1 142,742 - Atu3134 0.63 -0.7 142,962 + Atu3134 0.87 +0.7 143,039 + +0.1 143,175 + +0.1 143,264 + Atu3135 0.12 +0.2 143,414 + Atu3135 0.23 +0.4 143,513 - Atu3135 0.31 +0.3 143,656 - Atu3135 0.42 -0.4 143,656 - Atu3135 0.42 -0.8 143,756 + Atu3135 0.50 -0.3 143,787 + Atu3135 0.53 -0.1 143,809 - Atu3135 0.54 +0.7 143,809 - Atu3135 0.54 +0.1 143,933 - Atu3135 0.64 -0.2 143,990 + Atu3135 0.68 +0.2 143,998 - Atu3135 0.69 +0.1 144,039 - Atu3135 0.72 +0.0 144,104 + Atu3135 0.77 +0.3 144,112 - Atu3135 0.78 +1.1 144,114 + Atu3135 0.78 -0.8 144,114 + Atu3135 0.78 +0.2 144,197 - Atu3135 0.85 -0.0 144,300 - -0.0 144,361 + +0.1 144,369 - +0.1 144,430 + -0.4 144,537 + Atu3136 0.27 +0.0 144,586 + Atu3136 0.37 +0.9 144,605 + Atu3136 0.40 +0.1 144,623 - Atu3136 0.44 +0.1 144,705 + Atu3136 0.60 +0.1 144,731 + Atu3136 0.65 -0.1 144,759 + Atu3136 0.70 -0.2 144,845 - Atu3136 0.86 -0.4 145,052 + -0.4 145,060 - +0.2 145,156 - Atu3137 0.17 +0.4 145,218 - Atu3137 0.24 -0.4 145,280 - Atu3137 0.30 +0.2 145,374 + Atu3137 0.40 +0.4 145,374 + Atu3137 0.40 -1.9
Or see this region's nucleotide sequence