Experiment: syringaldehyde 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4794 and Atu4795 are separated by 54 nucleotides Atu4795 and Atu4796 are separated by 86 nucleotides Atu4796 and Atu4797 are separated by 5 nucleotides Atu4797 and Atu4798 overlap by 4 nucleotides
Atu4794: Atu4794 - polysaccharide biosynthesis protein, at 1,968,800 to 1,970,962
Atu4794
Atu4795: Atu4795 - LuxR family transcriptional regulator, at 1,971,017 to 1,971,727
Atu4795
Atu4796: Atu4796 - hypothetical protein, at 1,971,814 to 1,972,458
Atu4796
Atu4797: Atu4797 - glucose-1-phosphate cytidylyltransferase, at 1,972,464 to 1,973,276
Atu4797
Atu4798: Atu4798 - hypothetical protein, at 1,973,273 to 1,974,565
Atu4798
Position (kb) 1971
1972
1973 Strain fitness (log2 ratio) -1
0
1
2 at 1970.873 kb on + strand at 1970.881 kb on - strand at 1970.883 kb on + strand at 1970.926 kb on - strand at 1970.990 kb on + strand at 1971.023 kb on - strand at 1971.035 kb on - strand at 1971.098 kb on + strand, within Atu4795 at 1971.135 kb on - strand, within Atu4795 at 1971.141 kb on + strand, within Atu4795 at 1971.242 kb on + strand, within Atu4795 at 1971.277 kb on + strand, within Atu4795 at 1971.313 kb on + strand, within Atu4795 at 1971.346 kb on + strand, within Atu4795 at 1971.346 kb on + strand, within Atu4795 at 1971.346 kb on + strand, within Atu4795 at 1971.354 kb on - strand, within Atu4795 at 1971.354 kb on - strand, within Atu4795 at 1971.354 kb on - strand, within Atu4795 at 1971.361 kb on + strand, within Atu4795 at 1971.361 kb on + strand, within Atu4795 at 1971.361 kb on + strand, within Atu4795 at 1971.361 kb on + strand, within Atu4795 at 1971.369 kb on - strand, within Atu4795 at 1971.457 kb on - strand, within Atu4795 at 1971.497 kb on + strand, within Atu4795 at 1971.497 kb on + strand, within Atu4795 at 1971.497 kb on + strand, within Atu4795 at 1971.505 kb on - strand, within Atu4795 at 1971.505 kb on - strand, within Atu4795 at 1971.505 kb on - strand, within Atu4795 at 1971.563 kb on + strand, within Atu4795 at 1971.571 kb on - strand, within Atu4795 at 1971.571 kb on - strand, within Atu4795 at 1971.571 kb on - strand, within Atu4795 at 1971.571 kb on - strand, within Atu4795 at 1971.571 kb on - strand, within Atu4795 at 1971.783 kb on + strand at 1971.794 kb on + strand at 1971.829 kb on - strand at 1971.872 kb on - strand at 1971.927 kb on - strand, within Atu4796 at 1971.939 kb on + strand, within Atu4796 at 1971.994 kb on + strand, within Atu4796 at 1971.994 kb on - strand, within Atu4796 at 1972.016 kb on - strand, within Atu4796 at 1972.016 kb on - strand, within Atu4796 at 1972.107 kb on + strand, within Atu4796 at 1972.129 kb on + strand, within Atu4796 at 1972.179 kb on + strand, within Atu4796 at 1972.275 kb on + strand, within Atu4796 at 1972.290 kb on + strand, within Atu4796 at 1972.290 kb on + strand, within Atu4796 at 1972.325 kb on + strand, within Atu4796 at 1972.333 kb on - strand, within Atu4796 at 1972.333 kb on - strand, within Atu4796 at 1972.349 kb on + strand, within Atu4796 at 1972.357 kb on - strand, within Atu4796 at 1972.363 kb on + strand, within Atu4796 at 1972.363 kb on + strand, within Atu4796 at 1972.371 kb on - strand, within Atu4796 at 1972.482 kb on - strand at 1972.564 kb on - strand, within Atu4797 at 1972.590 kb on + strand, within Atu4797 at 1972.590 kb on + strand, within Atu4797 at 1972.725 kb on - strand, within Atu4797 at 1972.922 kb on - strand, within Atu4797 at 1972.942 kb on + strand, within Atu4797 at 1972.950 kb on - strand, within Atu4797 at 1972.950 kb on - strand, within Atu4797 at 1972.955 kb on + strand, within Atu4797 at 1972.963 kb on - strand, within Atu4797 at 1972.999 kb on - strand, within Atu4797 at 1973.022 kb on - strand, within Atu4797 at 1973.142 kb on + strand, within Atu4797 at 1973.143 kb on - strand, within Atu4797 at 1973.143 kb on - strand, within Atu4797 at 1973.178 kb on + strand, within Atu4797 at 1973.191 kb on - strand, within Atu4797 at 1973.191 kb on - strand, within Atu4797 at 1973.267 kb on - strand at 1973.270 kb on + strand at 1973.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 0.5 mM remove 1,970,873 + +0.3 1,970,881 - +0.0 1,970,883 + +0.4 1,970,926 - +0.4 1,970,990 + -0.3 1,971,023 - +0.0 1,971,035 - +0.3 1,971,098 + Atu4795 0.11 -0.2 1,971,135 - Atu4795 0.17 +0.1 1,971,141 + Atu4795 0.17 +0.1 1,971,242 + Atu4795 0.32 -0.2 1,971,277 + Atu4795 0.37 +0.0 1,971,313 + Atu4795 0.42 +0.4 1,971,346 + Atu4795 0.46 +1.0 1,971,346 + Atu4795 0.46 +1.9 1,971,346 + Atu4795 0.46 +0.3 1,971,354 - Atu4795 0.47 +0.0 1,971,354 - Atu4795 0.47 +0.2 1,971,354 - Atu4795 0.47 +0.4 1,971,361 + Atu4795 0.48 +0.7 1,971,361 + Atu4795 0.48 +0.3 1,971,361 + Atu4795 0.48 +0.3 1,971,361 + Atu4795 0.48 +0.4 1,971,369 - Atu4795 0.50 +0.1 1,971,457 - Atu4795 0.62 +0.3 1,971,497 + Atu4795 0.68 +0.1 1,971,497 + Atu4795 0.68 +0.4 1,971,497 + Atu4795 0.68 +0.3 1,971,505 - Atu4795 0.69 +0.2 1,971,505 - Atu4795 0.69 +0.2 1,971,505 - Atu4795 0.69 +0.2 1,971,563 + Atu4795 0.77 -0.2 1,971,571 - Atu4795 0.78 +0.2 1,971,571 - Atu4795 0.78 +0.7 1,971,571 - Atu4795 0.78 +0.1 1,971,571 - Atu4795 0.78 +0.5 1,971,571 - Atu4795 0.78 -0.2 1,971,783 + -0.0 1,971,794 + +0.4 1,971,829 - +0.6 1,971,872 - +0.1 1,971,927 - Atu4796 0.18 +0.3 1,971,939 + Atu4796 0.19 +0.4 1,971,994 + Atu4796 0.28 +0.5 1,971,994 - Atu4796 0.28 +0.4 1,972,016 - Atu4796 0.31 +0.1 1,972,016 - Atu4796 0.31 +0.2 1,972,107 + Atu4796 0.45 +0.2 1,972,129 + Atu4796 0.49 +0.1 1,972,179 + Atu4796 0.57 +0.1 1,972,275 + Atu4796 0.71 +0.5 1,972,290 + Atu4796 0.74 +0.8 1,972,290 + Atu4796 0.74 -0.1 1,972,325 + Atu4796 0.79 +0.9 1,972,333 - Atu4796 0.80 +1.0 1,972,333 - Atu4796 0.80 +0.2 1,972,349 + Atu4796 0.83 +0.7 1,972,357 - Atu4796 0.84 +0.4 1,972,363 + Atu4796 0.85 -0.4 1,972,363 + Atu4796 0.85 +0.1 1,972,371 - Atu4796 0.86 -0.1 1,972,482 - -0.1 1,972,564 - Atu4797 0.12 -0.0 1,972,590 + Atu4797 0.15 +0.2 1,972,590 + Atu4797 0.15 -0.7 1,972,725 - Atu4797 0.32 -0.2 1,972,922 - Atu4797 0.56 +0.6 1,972,942 + Atu4797 0.59 +0.5 1,972,950 - Atu4797 0.60 -0.4 1,972,950 - Atu4797 0.60 -0.3 1,972,955 + Atu4797 0.60 +0.4 1,972,963 - Atu4797 0.61 +0.2 1,972,999 - Atu4797 0.66 +0.0 1,973,022 - Atu4797 0.69 -0.8 1,973,142 + Atu4797 0.83 -0.1 1,973,143 - Atu4797 0.84 +0.1 1,973,143 - Atu4797 0.84 +1.0 1,973,178 + Atu4797 0.88 +0.5 1,973,191 - Atu4797 0.89 +0.2 1,973,191 - Atu4797 0.89 +0.1 1,973,267 - +0.3 1,973,270 + -0.3 1,973,306 - +0.6
Or see this region's nucleotide sequence