Strain Fitness in Agrobacterium fabrum C58 around Atu3860

Experiment: syringaldehyde 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3858 and Atu3859 are separated by 190 nucleotidesAtu3859 and Atu3860 are separated by 333 nucleotidesAtu3860 and Atu3861 are separated by 168 nucleotidesAtu3861 and Atu3862 are separated by 134 nucleotidesAtu3862 and Atu3863 are separated by 41 nucleotides Atu3858: Atu3858 - hypothetical protein, at 947,608 to 947,988 Atu3858 Atu3859: Atu3859 - tRNA-Ser, at 948,179 to 948,268 Atu3859 Atu3860: Atu3860 - hypothetical protein, at 948,602 to 950,845 Atu3860 Atu3861: Atu3861 - acyl-CoA hydrolase, at 951,014 to 951,403 Atu3861 Atu3862: Atu3862 - hypothetical protein, at 951,538 to 951,771 Atu3862 Atu3863: Atu3863 - ABC transporter permease, at 951,813 to 953,294 Atu3863 Position (kb) 948 949 950 951Strain fitness (log2 ratio) -2 -1 0 1 2at 947.619 kb on + strandat 947.619 kb on + strandat 947.621 kb on + strandat 947.621 kb on + strandat 947.629 kb on - strandat 947.639 kb on - strandat 947.649 kb on - strand, within Atu3858at 947.660 kb on + strand, within Atu3858at 947.660 kb on + strand, within Atu3858at 947.668 kb on - strand, within Atu3858at 947.668 kb on - strand, within Atu3858at 947.668 kb on - strand, within Atu3858at 947.668 kb on - strand, within Atu3858at 947.668 kb on - strand, within Atu3858at 947.668 kb on - strand, within Atu3858at 947.672 kb on - strand, within Atu3858at 947.680 kb on - strand, within Atu3858at 947.767 kb on - strand, within Atu3858at 947.774 kb on - strand, within Atu3858at 947.922 kb on + strand, within Atu3858at 948.061 kb on + strandat 948.061 kb on + strandat 948.069 kb on - strandat 948.391 kb on - strandat 948.398 kb on + strandat 948.432 kb on + strandat 948.432 kb on + strandat 948.466 kb on + strandat 948.466 kb on + strandat 948.474 kb on - strandat 948.474 kb on - strandat 948.474 kb on - strandat 948.557 kb on + strandat 948.577 kb on - strandat 948.700 kb on + strandat 948.708 kb on - strandat 948.782 kb on + strandat 948.795 kb on + strandat 948.795 kb on + strandat 948.795 kb on - strandat 948.803 kb on - strandat 948.803 kb on - strandat 948.803 kb on - strandat 948.803 kb on - strandat 948.803 kb on - strandat 948.803 kb on - strandat 948.803 kb on - strandat 948.814 kb on - strandat 948.819 kb on + strandat 948.843 kb on + strand, within Atu3860at 948.843 kb on + strand, within Atu3860at 948.850 kb on + strand, within Atu3860at 948.851 kb on - strand, within Atu3860at 948.851 kb on - strand, within Atu3860at 948.858 kb on - strand, within Atu3860at 948.931 kb on - strand, within Atu3860at 948.932 kb on - strand, within Atu3860at 948.990 kb on + strand, within Atu3860at 949.004 kb on - strand, within Atu3860at 949.044 kb on + strand, within Atu3860at 949.045 kb on + strand, within Atu3860at 949.062 kb on + strand, within Atu3860at 949.084 kb on - strand, within Atu3860at 949.102 kb on + strand, within Atu3860at 949.111 kb on + strand, within Atu3860at 949.117 kb on - strand, within Atu3860at 949.147 kb on + strand, within Atu3860at 949.147 kb on + strand, within Atu3860at 949.148 kb on + strand, within Atu3860at 949.155 kb on - strand, within Atu3860at 949.156 kb on - strand, within Atu3860at 949.219 kb on + strand, within Atu3860at 949.222 kb on + strand, within Atu3860at 949.232 kb on - strand, within Atu3860at 949.311 kb on - strand, within Atu3860at 949.341 kb on - strand, within Atu3860at 949.372 kb on - strand, within Atu3860at 949.474 kb on - strand, within Atu3860at 949.496 kb on + strand, within Atu3860at 949.602 kb on - strand, within Atu3860at 949.633 kb on - strand, within Atu3860at 949.642 kb on + strand, within Atu3860at 949.667 kb on + strand, within Atu3860at 949.758 kb on - strand, within Atu3860at 949.766 kb on + strand, within Atu3860at 949.777 kb on + strand, within Atu3860at 949.785 kb on - strand, within Atu3860at 949.826 kb on - strand, within Atu3860at 949.865 kb on - strand, within Atu3860at 949.904 kb on + strand, within Atu3860at 949.905 kb on - strand, within Atu3860at 949.964 kb on - strand, within Atu3860at 950.036 kb on + strand, within Atu3860at 950.051 kb on - strand, within Atu3860at 950.161 kb on + strand, within Atu3860at 950.282 kb on + strand, within Atu3860at 950.343 kb on + strand, within Atu3860at 950.450 kb on + strand, within Atu3860at 950.492 kb on - strand, within Atu3860at 950.529 kb on - strand, within Atu3860at 950.726 kb on + strandat 950.763 kb on + strandat 950.763 kb on + strandat 950.778 kb on - strandat 950.799 kb on + strandat 950.824 kb on + strandat 950.830 kb on + strandat 950.840 kb on + strandat 950.863 kb on + strandat 950.924 kb on + strandat 951.003 kb on + strandat 951.020 kb on - strandat 951.029 kb on - strandat 951.041 kb on - strandat 951.060 kb on - strand, within Atu3861at 951.089 kb on - strand, within Atu3861at 951.096 kb on + strand, within Atu3861at 951.218 kb on + strand, within Atu3861at 951.244 kb on + strand, within Atu3861at 951.246 kb on - strand, within Atu3861at 951.327 kb on - strand, within Atu3861at 951.438 kb on + strandat 951.451 kb on - strandat 951.451 kb on - strandat 951.490 kb on + strandat 951.498 kb on - strandat 951.569 kb on - strand, within Atu3862at 951.588 kb on - strand, within Atu3862at 951.613 kb on - strand, within Atu3862at 951.677 kb on + strand, within Atu3862at 951.677 kb on + strand, within Atu3862at 951.677 kb on + strand, within Atu3862at 951.677 kb on + strand, within Atu3862at 951.677 kb on + strand, within Atu3862at 951.677 kb on + strand, within Atu3862at 951.685 kb on - strand, within Atu3862at 951.685 kb on - strand, within Atu3862at 951.746 kb on - strand, within Atu3862at 951.778 kb on - strandat 951.786 kb on - strandat 951.790 kb on + strandat 951.790 kb on + strandat 951.798 kb on - strandat 951.798 kb on - strandat 951.812 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 0.5 mM
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947,619 + -0.2
947,619 + +0.1
947,621 + -0.1
947,621 + -0.0
947,629 - -0.5
947,639 - +0.2
947,649 - Atu3858 0.11 +0.5
947,660 + Atu3858 0.14 +0.1
947,660 + Atu3858 0.14 +0.4
947,668 - Atu3858 0.16 +0.4
947,668 - Atu3858 0.16 -0.0
947,668 - Atu3858 0.16 -0.4
947,668 - Atu3858 0.16 -0.2
947,668 - Atu3858 0.16 +0.2
947,668 - Atu3858 0.16 +0.1
947,672 - Atu3858 0.17 -0.4
947,680 - Atu3858 0.19 -0.2
947,767 - Atu3858 0.42 -0.4
947,774 - Atu3858 0.44 +0.1
947,922 + Atu3858 0.82 +0.5
948,061 + +0.4
948,061 + -0.5
948,069 - -0.3
948,391 - +0.1
948,398 + -0.5
948,432 + -0.1
948,432 + +0.9
948,466 + +0.4
948,466 + -0.3
948,474 - +0.6
948,474 - +0.4
948,474 - +0.1
948,557 + -0.2
948,577 - +0.7
948,700 + +0.6
948,708 - +1.0
948,782 + -0.7
948,795 + +0.2
948,795 + +0.3
948,795 - +0.5
948,803 - -0.6
948,803 - +0.0
948,803 - +0.0
948,803 - +0.2
948,803 - +0.3
948,803 - +0.1
948,803 - +0.1
948,814 - +1.1
948,819 + +0.4
948,843 + Atu3860 0.11 +0.1
948,843 + Atu3860 0.11 +0.4
948,850 + Atu3860 0.11 +0.4
948,851 - Atu3860 0.11 +0.4
948,851 - Atu3860 0.11 +0.3
948,858 - Atu3860 0.11 +0.0
948,931 - Atu3860 0.15 +0.4
948,932 - Atu3860 0.15 +0.1
948,990 + Atu3860 0.17 -0.1
949,004 - Atu3860 0.18 +0.9
949,044 + Atu3860 0.20 +0.5
949,045 + Atu3860 0.20 +0.5
949,062 + Atu3860 0.20 +0.1
949,084 - Atu3860 0.21 +0.2
949,102 + Atu3860 0.22 -0.2
949,111 + Atu3860 0.23 +0.4
949,117 - Atu3860 0.23 +0.3
949,147 + Atu3860 0.24 +0.2
949,147 + Atu3860 0.24 +0.1
949,148 + Atu3860 0.24 +0.3
949,155 - Atu3860 0.25 -0.5
949,156 - Atu3860 0.25 -0.1
949,219 + Atu3860 0.27 +0.4
949,222 + Atu3860 0.28 +0.1
949,232 - Atu3860 0.28 +1.8
949,311 - Atu3860 0.32 +0.2
949,341 - Atu3860 0.33 +0.7
949,372 - Atu3860 0.34 +0.1
949,474 - Atu3860 0.39 +0.3
949,496 + Atu3860 0.40 +0.6
949,602 - Atu3860 0.45 +0.5
949,633 - Atu3860 0.46 +0.1
949,642 + Atu3860 0.46 +0.7
949,667 + Atu3860 0.47 +0.6
949,758 - Atu3860 0.52 +1.2
949,766 + Atu3860 0.52 +0.1
949,777 + Atu3860 0.52 +0.3
949,785 - Atu3860 0.53 +0.1
949,826 - Atu3860 0.55 +0.2
949,865 - Atu3860 0.56 +0.5
949,904 + Atu3860 0.58 -0.0
949,905 - Atu3860 0.58 -0.1
949,964 - Atu3860 0.61 +0.3
950,036 + Atu3860 0.64 +0.3
950,051 - Atu3860 0.65 -0.2
950,161 + Atu3860 0.69 +0.1
950,282 + Atu3860 0.75 -0.0
950,343 + Atu3860 0.78 +0.5
950,450 + Atu3860 0.82 +0.4
950,492 - Atu3860 0.84 -0.2
950,529 - Atu3860 0.86 +0.5
950,726 + +0.1
950,763 + +0.1
950,763 + +1.1
950,778 - +0.3
950,799 + +0.3
950,824 + +0.4
950,830 + +0.5
950,840 + -0.0
950,863 + -2.4
950,924 + -1.7
951,003 + +0.7
951,020 - +0.5
951,029 - -1.1
951,041 - -0.5
951,060 - Atu3861 0.12 -0.2
951,089 - Atu3861 0.19 -0.2
951,096 + Atu3861 0.21 +0.0
951,218 + Atu3861 0.52 -0.5
951,244 + Atu3861 0.59 -0.2
951,246 - Atu3861 0.59 -0.9
951,327 - Atu3861 0.80 -0.7
951,438 + -0.0
951,451 - -0.1
951,451 - +0.1
951,490 + -0.2
951,498 - +0.2
951,569 - Atu3862 0.13 +1.0
951,588 - Atu3862 0.21 +0.2
951,613 - Atu3862 0.32 -0.2
951,677 + Atu3862 0.59 +0.8
951,677 + Atu3862 0.59 -0.3
951,677 + Atu3862 0.59 -0.3
951,677 + Atu3862 0.59 +0.1
951,677 + Atu3862 0.59 -0.4
951,677 + Atu3862 0.59 -1.2
951,685 - Atu3862 0.63 +0.0
951,685 - Atu3862 0.63 -0.2
951,746 - Atu3862 0.89 -0.5
951,778 - -0.0
951,786 - -0.9
951,790 + -0.3
951,790 + -0.0
951,798 - +0.7
951,798 - +0.1
951,812 + -0.2

Or see this region's nucleotide sequence