Strain Fitness in Agrobacterium fabrum C58 around Atu6185

Experiment: Acetosyringone 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu6184 and Atu6185 are separated by 111 nucleotidesAtu6185 and Atu6186 are separated by 69 nucleotides Atu6184: Atu6184 - virA/G regulated protein, at 199,956 to 201,962 Atu6184 Atu6185: Atu6185 - virA/G regulated protein, at 202,074 to 204,596 Atu6185 Atu6186: Atu6186 - virA/G regulated protein, at 204,666 to 205,232 Atu6186 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -1 0 1 2 3 4at 201.119 kb on + strand, within Atu6184at 201.153 kb on + strand, within Atu6184at 201.194 kb on - strand, within Atu6184at 201.254 kb on + strand, within Atu6184at 201.328 kb on + strand, within Atu6184at 201.336 kb on - strand, within Atu6184at 201.336 kb on - strand, within Atu6184at 201.395 kb on - strand, within Atu6184at 201.395 kb on - strand, within Atu6184at 201.496 kb on - strand, within Atu6184at 201.503 kb on + strand, within Atu6184at 201.596 kb on + strand, within Atu6184at 201.596 kb on + strand, within Atu6184at 201.604 kb on - strand, within Atu6184at 201.604 kb on - strand, within Atu6184at 201.610 kb on + strand, within Atu6184at 201.617 kb on - strand, within Atu6184at 201.617 kb on - strand, within Atu6184at 201.643 kb on + strand, within Atu6184at 201.643 kb on + strand, within Atu6184at 201.643 kb on + strand, within Atu6184at 201.650 kb on - strand, within Atu6184at 201.651 kb on - strand, within Atu6184at 201.651 kb on - strand, within Atu6184at 201.651 kb on - strand, within Atu6184at 201.683 kb on + strand, within Atu6184at 201.685 kb on + strand, within Atu6184at 201.685 kb on + strand, within Atu6184at 201.693 kb on - strand, within Atu6184at 201.693 kb on - strand, within Atu6184at 201.724 kb on + strand, within Atu6184at 201.740 kb on - strand, within Atu6184at 201.750 kb on - strand, within Atu6184at 201.797 kb on - strandat 201.797 kb on - strandat 201.797 kb on - strandat 201.797 kb on - strandat 201.804 kb on - strandat 201.906 kb on - strandat 201.929 kb on + strandat 201.937 kb on - strandat 201.960 kb on - strandat 201.962 kb on + strandat 201.969 kb on - strandat 201.972 kb on + strandat 202.035 kb on + strandat 202.101 kb on + strandat 202.126 kb on + strandat 202.153 kb on - strandat 202.157 kb on + strandat 202.158 kb on - strandat 202.162 kb on + strandat 202.206 kb on - strandat 202.208 kb on - strandat 202.226 kb on + strandat 202.267 kb on + strandat 202.277 kb on + strandat 202.285 kb on - strandat 202.295 kb on - strandat 202.325 kb on - strandat 202.334 kb on - strand, within Atu6185at 202.339 kb on + strand, within Atu6185at 202.374 kb on - strand, within Atu6185at 202.406 kb on + strand, within Atu6185at 202.406 kb on - strand, within Atu6185at 202.428 kb on - strand, within Atu6185at 202.443 kb on + strand, within Atu6185at 202.449 kb on + strand, within Atu6185at 202.462 kb on + strand, within Atu6185at 202.476 kb on - strand, within Atu6185at 202.491 kb on - strand, within Atu6185at 202.520 kb on + strand, within Atu6185at 202.550 kb on + strand, within Atu6185at 202.553 kb on - strand, within Atu6185at 202.557 kb on - strand, within Atu6185at 202.582 kb on + strand, within Atu6185at 202.582 kb on + strand, within Atu6185at 202.625 kb on + strand, within Atu6185at 202.633 kb on - strand, within Atu6185at 202.675 kb on - strand, within Atu6185at 202.689 kb on + strand, within Atu6185at 202.697 kb on - strand, within Atu6185at 202.706 kb on - strand, within Atu6185at 202.708 kb on + strand, within Atu6185at 202.716 kb on - strand, within Atu6185at 202.726 kb on + strand, within Atu6185at 202.763 kb on + strand, within Atu6185at 202.773 kb on + strand, within Atu6185at 202.799 kb on - strand, within Atu6185at 202.803 kb on - strand, within Atu6185at 202.840 kb on - strand, within Atu6185at 202.840 kb on - strand, within Atu6185at 202.840 kb on - strand, within Atu6185at 202.842 kb on - strand, within Atu6185at 202.874 kb on + strand, within Atu6185at 202.885 kb on + strand, within Atu6185at 202.915 kb on + strand, within Atu6185at 202.920 kb on + strand, within Atu6185at 202.940 kb on + strand, within Atu6185at 202.990 kb on + strand, within Atu6185at 202.990 kb on + strand, within Atu6185at 202.990 kb on + strand, within Atu6185at 202.995 kb on + strand, within Atu6185at 202.998 kb on - strand, within Atu6185at 202.998 kb on - strand, within Atu6185at 202.998 kb on - strand, within Atu6185at 202.998 kb on - strand, within Atu6185at 202.998 kb on - strand, within Atu6185at 203.003 kb on - strand, within Atu6185at 203.020 kb on - strand, within Atu6185at 203.087 kb on - strand, within Atu6185at 203.133 kb on + strand, within Atu6185at 203.136 kb on - strand, within Atu6185at 203.140 kb on + strand, within Atu6185at 203.140 kb on + strand, within Atu6185at 203.140 kb on + strand, within Atu6185at 203.140 kb on + strand, within Atu6185at 203.141 kb on - strand, within Atu6185at 203.142 kb on - strand, within Atu6185at 203.146 kb on - strand, within Atu6185at 203.148 kb on - strand, within Atu6185at 203.148 kb on - strand, within Atu6185at 203.148 kb on - strand, within Atu6185at 203.148 kb on - strand, within Atu6185at 203.148 kb on - strand, within Atu6185at 203.148 kb on - strand, within Atu6185at 203.148 kb on - strand, within Atu6185at 203.156 kb on + strand, within Atu6185at 203.209 kb on - strand, within Atu6185at 203.253 kb on + strand, within Atu6185at 203.262 kb on + strand, within Atu6185at 203.277 kb on - strand, within Atu6185at 203.277 kb on - strand, within Atu6185at 203.280 kb on - strand, within Atu6185at 203.359 kb on + strand, within Atu6185at 203.456 kb on - strand, within Atu6185at 203.555 kb on + strand, within Atu6185at 203.562 kb on - strand, within Atu6185at 203.601 kb on + strand, within Atu6185at 203.638 kb on - strand, within Atu6185at 203.645 kb on + strand, within Atu6185at 203.646 kb on - strand, within Atu6185at 203.699 kb on + strand, within Atu6185at 203.729 kb on + strand, within Atu6185at 203.732 kb on - strand, within Atu6185at 203.740 kb on - strand, within Atu6185at 203.934 kb on - strand, within Atu6185at 203.971 kb on - strand, within Atu6185at 203.977 kb on + strand, within Atu6185at 203.978 kb on + strand, within Atu6185at 203.981 kb on - strand, within Atu6185at 203.981 kb on - strand, within Atu6185at 203.985 kb on - strand, within Atu6185at 203.987 kb on + strand, within Atu6185at 204.008 kb on - strand, within Atu6185at 204.009 kb on - strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.027 kb on + strand, within Atu6185at 204.035 kb on - strand, within Atu6185at 204.035 kb on - strand, within Atu6185at 204.035 kb on - strand, within Atu6185at 204.035 kb on - strand, within Atu6185at 204.052 kb on - strand, within Atu6185at 204.057 kb on - strand, within Atu6185at 204.070 kb on + strand, within Atu6185at 204.070 kb on + strand, within Atu6185at 204.070 kb on + strand, within Atu6185at 204.078 kb on - strand, within Atu6185at 204.107 kb on + strand, within Atu6185at 204.160 kb on + strand, within Atu6185at 204.199 kb on + strand, within Atu6185at 204.219 kb on - strand, within Atu6185at 204.238 kb on + strand, within Atu6185at 204.246 kb on - strand, within Atu6185at 204.258 kb on + strand, within Atu6185at 204.260 kb on + strand, within Atu6185at 204.265 kb on + strand, within Atu6185at 204.265 kb on + strand, within Atu6185at 204.265 kb on + strand, within Atu6185at 204.265 kb on + strand, within Atu6185at 204.266 kb on - strand, within Atu6185at 204.268 kb on - strand, within Atu6185at 204.273 kb on - strand, within Atu6185at 204.273 kb on - strand, within Atu6185at 204.274 kb on - strand, within Atu6185at 204.290 kb on + strand, within Atu6185at 204.447 kb on + strandat 204.457 kb on - strandat 204.513 kb on + strandat 204.516 kb on + strandat 204.523 kb on + strandat 204.548 kb on + strandat 204.556 kb on - strandat 204.617 kb on - strandat 204.647 kb on + strandat 204.729 kb on + strand, within Atu6186at 204.739 kb on + strand, within Atu6186at 204.832 kb on - strand, within Atu6186at 204.896 kb on - strand, within Atu6186at 204.912 kb on - strand, within Atu6186at 205.097 kb on + strand, within Atu6186at 205.136 kb on + strand, within Atu6186at 205.170 kb on - strand, within Atu6186at 205.209 kb on - strandat 205.227 kb on - strandat 205.245 kb on - strandat 205.250 kb on - strandat 205.257 kb on - strandat 205.273 kb on - strandat 205.290 kb on - strandat 205.308 kb on - strandat 205.355 kb on + strandat 205.355 kb on + strandat 205.363 kb on - strandat 205.365 kb on - strandat 205.379 kb on + strandat 205.388 kb on - strandat 205.402 kb on - strandat 205.403 kb on + strandat 205.403 kb on + strandat 205.421 kb on - strandat 205.428 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 1.25 mM
remove
201,119 + Atu6184 0.58 -0.5
201,153 + Atu6184 0.60 -0.2
201,194 - Atu6184 0.62 +0.1
201,254 + Atu6184 0.65 -0.9
201,328 + Atu6184 0.68 -0.5
201,336 - Atu6184 0.69 -0.4
201,336 - Atu6184 0.69 -0.3
201,395 - Atu6184 0.72 -0.1
201,395 - Atu6184 0.72 -0.4
201,496 - Atu6184 0.77 +0.1
201,503 + Atu6184 0.77 -0.0
201,596 + Atu6184 0.82 +0.1
201,596 + Atu6184 0.82 -0.8
201,604 - Atu6184 0.82 -0.3
201,604 - Atu6184 0.82 -0.6
201,610 + Atu6184 0.82 -1.0
201,617 - Atu6184 0.83 -0.8
201,617 - Atu6184 0.83 -0.6
201,643 + Atu6184 0.84 +0.2
201,643 + Atu6184 0.84 -0.0
201,643 + Atu6184 0.84 -0.5
201,650 - Atu6184 0.84 -0.5
201,651 - Atu6184 0.84 -0.2
201,651 - Atu6184 0.84 -0.4
201,651 - Atu6184 0.84 +2.1
201,683 + Atu6184 0.86 -1.0
201,685 + Atu6184 0.86 -0.2
201,685 + Atu6184 0.86 -0.3
201,693 - Atu6184 0.87 -0.3
201,693 - Atu6184 0.87 -1.3
201,724 + Atu6184 0.88 -0.5
201,740 - Atu6184 0.89 -0.8
201,750 - Atu6184 0.89 -0.6
201,797 - -0.2
201,797 - +0.2
201,797 - -0.3
201,797 - -0.5
201,804 - +0.5
201,906 - -0.9
201,929 + -0.3
201,937 - -0.4
201,960 - -0.4
201,962 + -0.0
201,969 - -0.1
201,972 + -0.5
202,035 + -0.5
202,101 + -1.0
202,126 + +0.7
202,153 - -0.7
202,157 + -0.0
202,158 - -0.6
202,162 + -1.7
202,206 - -0.4
202,208 - -0.6
202,226 + -0.3
202,267 + -0.4
202,277 + -0.4
202,285 - -0.9
202,295 - -0.4
202,325 - -0.5
202,334 - Atu6185 0.10 -0.1
202,339 + Atu6185 0.11 -0.3
202,374 - Atu6185 0.12 -0.6
202,406 + Atu6185 0.13 +0.2
202,406 - Atu6185 0.13 -0.2
202,428 - Atu6185 0.14 -0.1
202,443 + Atu6185 0.15 -0.1
202,449 + Atu6185 0.15 -1.2
202,462 + Atu6185 0.15 +1.5
202,476 - Atu6185 0.16 -0.7
202,491 - Atu6185 0.17 -0.5
202,520 + Atu6185 0.18 -0.8
202,550 + Atu6185 0.19 -0.1
202,553 - Atu6185 0.19 -0.6
202,557 - Atu6185 0.19 +0.0
202,582 + Atu6185 0.20 +0.3
202,582 + Atu6185 0.20 +4.7
202,625 + Atu6185 0.22 -1.5
202,633 - Atu6185 0.22 -0.4
202,675 - Atu6185 0.24 -0.5
202,689 + Atu6185 0.24 -0.6
202,697 - Atu6185 0.25 +0.1
202,706 - Atu6185 0.25 -0.4
202,708 + Atu6185 0.25 -0.0
202,716 - Atu6185 0.25 -0.3
202,726 + Atu6185 0.26 -0.4
202,763 + Atu6185 0.27 -0.3
202,773 + Atu6185 0.28 -0.4
202,799 - Atu6185 0.29 +0.2
202,803 - Atu6185 0.29 -0.3
202,840 - Atu6185 0.30 -0.3
202,840 - Atu6185 0.30 -0.6
202,840 - Atu6185 0.30 +0.1
202,842 - Atu6185 0.30 -0.4
202,874 + Atu6185 0.32 -0.5
202,885 + Atu6185 0.32 -0.8
202,915 + Atu6185 0.33 -0.7
202,920 + Atu6185 0.34 -1.3
202,940 + Atu6185 0.34 -0.1
202,990 + Atu6185 0.36 -0.6
202,990 + Atu6185 0.36 -0.3
202,990 + Atu6185 0.36 +0.6
202,995 + Atu6185 0.37 -0.1
202,998 - Atu6185 0.37 -0.4
202,998 - Atu6185 0.37 -0.2
202,998 - Atu6185 0.37 -0.9
202,998 - Atu6185 0.37 -0.5
202,998 - Atu6185 0.37 -0.2
203,003 - Atu6185 0.37 -0.6
203,020 - Atu6185 0.37 -0.3
203,087 - Atu6185 0.40 -0.1
203,133 + Atu6185 0.42 -0.5
203,136 - Atu6185 0.42 +0.0
203,140 + Atu6185 0.42 -0.0
203,140 + Atu6185 0.42 -0.1
203,140 + Atu6185 0.42 -0.1
203,140 + Atu6185 0.42 +0.2
203,141 - Atu6185 0.42 -0.6
203,142 - Atu6185 0.42 +0.3
203,146 - Atu6185 0.42 -0.4
203,148 - Atu6185 0.43 -0.8
203,148 - Atu6185 0.43 -0.2
203,148 - Atu6185 0.43 +0.3
203,148 - Atu6185 0.43 +0.2
203,148 - Atu6185 0.43 -0.5
203,148 - Atu6185 0.43 -0.5
203,148 - Atu6185 0.43 -0.3
203,156 + Atu6185 0.43 -0.5
203,209 - Atu6185 0.45 -0.9
203,253 + Atu6185 0.47 -0.2
203,262 + Atu6185 0.47 -0.1
203,277 - Atu6185 0.48 -0.4
203,277 - Atu6185 0.48 -0.3
203,280 - Atu6185 0.48 -0.3
203,359 + Atu6185 0.51 +0.0
203,456 - Atu6185 0.55 +0.3
203,555 + Atu6185 0.59 -0.6
203,562 - Atu6185 0.59 -1.0
203,601 + Atu6185 0.61 -0.1
203,638 - Atu6185 0.62 +0.2
203,645 + Atu6185 0.62 -0.3
203,646 - Atu6185 0.62 -0.9
203,699 + Atu6185 0.64 -0.7
203,729 + Atu6185 0.66 +0.2
203,732 - Atu6185 0.66 -0.8
203,740 - Atu6185 0.66 -0.2
203,934 - Atu6185 0.74 -0.1
203,971 - Atu6185 0.75 +0.3
203,977 + Atu6185 0.75 -0.1
203,978 + Atu6185 0.75 -0.2
203,981 - Atu6185 0.76 -1.0
203,981 - Atu6185 0.76 -0.8
203,985 - Atu6185 0.76 -1.7
203,987 + Atu6185 0.76 -0.4
204,008 - Atu6185 0.77 -0.5
204,009 - Atu6185 0.77 +0.8
204,027 + Atu6185 0.77 -0.3
204,027 + Atu6185 0.77 -1.2
204,027 + Atu6185 0.77 -1.5
204,027 + Atu6185 0.77 -0.6
204,027 + Atu6185 0.77 -0.2
204,027 + Atu6185 0.77 -0.5
204,027 + Atu6185 0.77 -0.0
204,027 + Atu6185 0.77 -0.5
204,027 + Atu6185 0.77 -0.6
204,035 - Atu6185 0.78 -0.6
204,035 - Atu6185 0.78 -0.6
204,035 - Atu6185 0.78 -0.4
204,035 - Atu6185 0.78 -0.1
204,052 - Atu6185 0.78 -0.1
204,057 - Atu6185 0.79 -0.7
204,070 + Atu6185 0.79 -0.6
204,070 + Atu6185 0.79 -1.0
204,070 + Atu6185 0.79 -0.3
204,078 - Atu6185 0.79 +0.1
204,107 + Atu6185 0.81 -1.7
204,160 + Atu6185 0.83 +0.1
204,199 + Atu6185 0.84 -0.6
204,219 - Atu6185 0.85 -0.4
204,238 + Atu6185 0.86 -0.6
204,246 - Atu6185 0.86 -0.5
204,258 + Atu6185 0.87 -0.2
204,260 + Atu6185 0.87 +0.2
204,265 + Atu6185 0.87 -0.4
204,265 + Atu6185 0.87 -0.7
204,265 + Atu6185 0.87 -0.3
204,265 + Atu6185 0.87 -0.5
204,266 - Atu6185 0.87 -0.1
204,268 - Atu6185 0.87 -0.1
204,273 - Atu6185 0.87 +0.5
204,273 - Atu6185 0.87 -0.3
204,274 - Atu6185 0.87 -0.2
204,290 + Atu6185 0.88 -0.3
204,447 + -0.5
204,457 - -0.8
204,513 + -0.0
204,516 + +0.5
204,523 + +0.5
204,548 + -0.2
204,556 - -0.2
204,617 - -0.3
204,647 + -1.0
204,729 + Atu6186 0.11 -0.4
204,739 + Atu6186 0.13 +0.0
204,832 - Atu6186 0.29 -0.6
204,896 - Atu6186 0.41 -0.2
204,912 - Atu6186 0.43 -0.6
205,097 + Atu6186 0.76 -0.6
205,136 + Atu6186 0.83 +0.3
205,170 - Atu6186 0.89 -0.4
205,209 - +0.2
205,227 - -0.0
205,245 - -0.5
205,250 - -0.5
205,257 - -0.8
205,273 - +0.0
205,290 - -0.8
205,308 - -0.7
205,355 + -0.5
205,355 + -0.4
205,363 - -0.6
205,365 - -0.8
205,379 + -0.9
205,388 - -0.4
205,402 - -0.9
205,403 + -0.2
205,403 + -0.1
205,421 - +0.9
205,428 + -0.3

Or see this region's nucleotide sequence