Strain Fitness in Agrobacterium fabrum C58 around Atu6184

Experiment: Acetosyringone 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu6183 and Atu6184 are separated by 73 nucleotidesAtu6184 and Atu6185 are separated by 111 nucleotides Atu6183: Atu6183 - virA/G regulated protein, at 197,861 to 199,882 Atu6183 Atu6184: Atu6184 - virA/G regulated protein, at 199,956 to 201,962 Atu6184 Atu6185: Atu6185 - virA/G regulated protein, at 202,074 to 204,596 Atu6185 Position (kb) 199 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 198.981 kb on - strand, within Atu6183at 199.063 kb on - strand, within Atu6183at 199.073 kb on + strand, within Atu6183at 199.073 kb on + strand, within Atu6183at 199.080 kb on + strand, within Atu6183at 199.081 kb on + strand, within Atu6183at 199.081 kb on - strand, within Atu6183at 199.083 kb on + strand, within Atu6183at 199.089 kb on - strand, within Atu6183at 199.089 kb on - strand, within Atu6183at 199.091 kb on - strand, within Atu6183at 199.160 kb on + strand, within Atu6183at 199.162 kb on + strand, within Atu6183at 199.170 kb on + strand, within Atu6183at 199.173 kb on - strand, within Atu6183at 199.209 kb on + strand, within Atu6183at 199.255 kb on - strand, within Atu6183at 199.286 kb on - strand, within Atu6183at 199.286 kb on - strand, within Atu6183at 199.291 kb on - strand, within Atu6183at 199.326 kb on - strand, within Atu6183at 199.370 kb on + strand, within Atu6183at 199.476 kb on + strand, within Atu6183at 199.484 kb on + strand, within Atu6183at 199.484 kb on - strand, within Atu6183at 199.488 kb on + strand, within Atu6183at 199.502 kb on - strand, within Atu6183at 199.617 kb on + strand, within Atu6183at 199.617 kb on + strand, within Atu6183at 199.617 kb on + strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.676 kb on + strand, within Atu6183at 199.682 kb on + strandat 199.682 kb on + strandat 199.684 kb on - strandat 199.684 kb on - strandat 199.684 kb on - strandat 199.735 kb on + strandat 199.735 kb on + strandat 199.834 kb on + strandat 199.834 kb on + strandat 199.834 kb on + strandat 199.834 kb on + strandat 199.840 kb on - strandat 199.842 kb on - strandat 199.842 kb on - strandat 199.842 kb on - strandat 199.842 kb on - strandat 199.896 kb on - strandat 199.908 kb on - strandat 199.978 kb on - strandat 199.990 kb on - strandat 200.120 kb on + strandat 200.128 kb on - strandat 200.128 kb on - strandat 200.273 kb on - strand, within Atu6184at 200.334 kb on - strand, within Atu6184at 200.372 kb on + strand, within Atu6184at 200.380 kb on - strand, within Atu6184at 200.444 kb on + strand, within Atu6184at 200.444 kb on - strand, within Atu6184at 200.450 kb on + strand, within Atu6184at 200.497 kb on + strand, within Atu6184at 200.503 kb on - strand, within Atu6184at 200.581 kb on - strand, within Atu6184at 200.658 kb on + strand, within Atu6184at 200.663 kb on + strand, within Atu6184at 200.671 kb on - strand, within Atu6184at 200.673 kb on + strand, within Atu6184at 200.725 kb on + strand, within Atu6184at 200.749 kb on + strand, within Atu6184at 200.825 kb on - strand, within Atu6184at 200.925 kb on - strand, within Atu6184at 200.932 kb on - strand, within Atu6184at 200.942 kb on + strand, within Atu6184at 200.942 kb on + strand, within Atu6184at 200.942 kb on - strand, within Atu6184at 200.950 kb on - strand, within Atu6184at 200.985 kb on - strand, within Atu6184at 201.004 kb on + strand, within Atu6184at 201.030 kb on - strand, within Atu6184at 201.037 kb on + strand, within Atu6184at 201.039 kb on - strand, within Atu6184at 201.119 kb on + strand, within Atu6184at 201.153 kb on + strand, within Atu6184at 201.194 kb on - strand, within Atu6184at 201.254 kb on + strand, within Atu6184at 201.328 kb on + strand, within Atu6184at 201.336 kb on - strand, within Atu6184at 201.336 kb on - strand, within Atu6184at 201.395 kb on - strand, within Atu6184at 201.395 kb on - strand, within Atu6184at 201.496 kb on - strand, within Atu6184at 201.503 kb on + strand, within Atu6184at 201.596 kb on + strand, within Atu6184at 201.596 kb on + strand, within Atu6184at 201.604 kb on - strand, within Atu6184at 201.604 kb on - strand, within Atu6184at 201.610 kb on + strand, within Atu6184at 201.617 kb on - strand, within Atu6184at 201.617 kb on - strand, within Atu6184at 201.643 kb on + strand, within Atu6184at 201.643 kb on + strand, within Atu6184at 201.643 kb on + strand, within Atu6184at 201.650 kb on - strand, within Atu6184at 201.651 kb on - strand, within Atu6184at 201.651 kb on - strand, within Atu6184at 201.651 kb on - strand, within Atu6184at 201.683 kb on + strand, within Atu6184at 201.685 kb on + strand, within Atu6184at 201.685 kb on + strand, within Atu6184at 201.693 kb on - strand, within Atu6184at 201.693 kb on - strand, within Atu6184at 201.724 kb on + strand, within Atu6184at 201.740 kb on - strand, within Atu6184at 201.750 kb on - strand, within Atu6184at 201.797 kb on - strandat 201.797 kb on - strandat 201.797 kb on - strandat 201.797 kb on - strandat 201.804 kb on - strandat 201.906 kb on - strandat 201.929 kb on + strandat 201.937 kb on - strandat 201.960 kb on - strandat 201.962 kb on + strandat 201.969 kb on - strandat 201.972 kb on + strandat 202.035 kb on + strandat 202.101 kb on + strandat 202.126 kb on + strandat 202.153 kb on - strandat 202.157 kb on + strandat 202.158 kb on - strandat 202.162 kb on + strandat 202.206 kb on - strandat 202.208 kb on - strandat 202.226 kb on + strandat 202.267 kb on + strandat 202.277 kb on + strandat 202.285 kb on - strandat 202.295 kb on - strandat 202.325 kb on - strandat 202.334 kb on - strand, within Atu6185at 202.339 kb on + strand, within Atu6185at 202.374 kb on - strand, within Atu6185at 202.406 kb on + strand, within Atu6185at 202.406 kb on - strand, within Atu6185at 202.428 kb on - strand, within Atu6185at 202.443 kb on + strand, within Atu6185at 202.449 kb on + strand, within Atu6185at 202.462 kb on + strand, within Atu6185at 202.476 kb on - strand, within Atu6185at 202.491 kb on - strand, within Atu6185at 202.520 kb on + strand, within Atu6185at 202.550 kb on + strand, within Atu6185at 202.553 kb on - strand, within Atu6185at 202.557 kb on - strand, within Atu6185at 202.582 kb on + strand, within Atu6185at 202.582 kb on + strand, within Atu6185at 202.625 kb on + strand, within Atu6185at 202.633 kb on - strand, within Atu6185at 202.675 kb on - strand, within Atu6185at 202.689 kb on + strand, within Atu6185at 202.697 kb on - strand, within Atu6185at 202.706 kb on - strand, within Atu6185at 202.708 kb on + strand, within Atu6185at 202.716 kb on - strand, within Atu6185at 202.726 kb on + strand, within Atu6185at 202.763 kb on + strand, within Atu6185at 202.773 kb on + strand, within Atu6185at 202.799 kb on - strand, within Atu6185at 202.803 kb on - strand, within Atu6185at 202.840 kb on - strand, within Atu6185at 202.840 kb on - strand, within Atu6185at 202.840 kb on - strand, within Atu6185at 202.842 kb on - strand, within Atu6185at 202.874 kb on + strand, within Atu6185at 202.885 kb on + strand, within Atu6185at 202.915 kb on + strand, within Atu6185at 202.920 kb on + strand, within Atu6185at 202.940 kb on + strand, within Atu6185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 1.25 mM
remove
198,981 - Atu6183 0.55 -1.5
199,063 - Atu6183 0.59 +0.8
199,073 + Atu6183 0.60 -0.2
199,073 + Atu6183 0.60 -0.2
199,080 + Atu6183 0.60 -2.7
199,081 + Atu6183 0.60 -0.5
199,081 - Atu6183 0.60 +0.4
199,083 + Atu6183 0.60 -0.8
199,089 - Atu6183 0.61 -0.3
199,089 - Atu6183 0.61 -0.2
199,091 - Atu6183 0.61 -0.3
199,160 + Atu6183 0.64 -0.8
199,162 + Atu6183 0.64 -0.3
199,170 + Atu6183 0.65 -0.4
199,173 - Atu6183 0.65 +0.1
199,209 + Atu6183 0.67 -0.2
199,255 - Atu6183 0.69 -0.5
199,286 - Atu6183 0.70 -0.5
199,286 - Atu6183 0.70 -0.3
199,291 - Atu6183 0.71 -0.8
199,326 - Atu6183 0.72 -0.2
199,370 + Atu6183 0.75 -0.5
199,476 + Atu6183 0.80 -1.0
199,484 + Atu6183 0.80 -0.1
199,484 - Atu6183 0.80 +0.0
199,488 + Atu6183 0.80 -0.7
199,502 - Atu6183 0.81 +0.1
199,617 + Atu6183 0.87 -0.4
199,617 + Atu6183 0.87 -0.1
199,617 + Atu6183 0.87 -0.3
199,625 - Atu6183 0.87 -1.3
199,625 - Atu6183 0.87 -0.7
199,625 - Atu6183 0.87 +0.1
199,625 - Atu6183 0.87 -0.5
199,625 - Atu6183 0.87 -0.5
199,676 + Atu6183 0.90 -1.3
199,682 + -0.4
199,682 + -0.2
199,684 - -0.2
199,684 - -0.5
199,684 - -0.4
199,735 + -0.7
199,735 + -1.0
199,834 + -0.3
199,834 + +0.0
199,834 + +0.9
199,834 + -0.4
199,840 - -0.4
199,842 - -0.2
199,842 - -0.1
199,842 - -0.7
199,842 - +0.8
199,896 - -0.1
199,908 - -0.4
199,978 - -0.0
199,990 - -0.1
200,120 + -0.9
200,128 - -0.7
200,128 - -0.4
200,273 - Atu6184 0.16 -0.2
200,334 - Atu6184 0.19 -0.4
200,372 + Atu6184 0.21 -0.3
200,380 - Atu6184 0.21 -0.6
200,444 + Atu6184 0.24 -0.2
200,444 - Atu6184 0.24 -0.4
200,450 + Atu6184 0.25 -0.4
200,497 + Atu6184 0.27 -0.4
200,503 - Atu6184 0.27 -0.3
200,581 - Atu6184 0.31 -0.4
200,658 + Atu6184 0.35 +0.4
200,663 + Atu6184 0.35 -0.6
200,671 - Atu6184 0.36 -0.8
200,673 + Atu6184 0.36 -0.6
200,725 + Atu6184 0.38 -0.3
200,749 + Atu6184 0.40 -0.4
200,825 - Atu6184 0.43 -0.2
200,925 - Atu6184 0.48 -0.6
200,932 - Atu6184 0.49 +0.2
200,942 + Atu6184 0.49 -0.7
200,942 + Atu6184 0.49 +0.7
200,942 - Atu6184 0.49 -0.1
200,950 - Atu6184 0.50 -0.1
200,985 - Atu6184 0.51 -0.9
201,004 + Atu6184 0.52 +0.1
201,030 - Atu6184 0.54 -0.1
201,037 + Atu6184 0.54 -0.7
201,039 - Atu6184 0.54 -0.5
201,119 + Atu6184 0.58 -0.5
201,153 + Atu6184 0.60 -0.2
201,194 - Atu6184 0.62 +0.1
201,254 + Atu6184 0.65 -0.9
201,328 + Atu6184 0.68 -0.5
201,336 - Atu6184 0.69 -0.4
201,336 - Atu6184 0.69 -0.3
201,395 - Atu6184 0.72 -0.1
201,395 - Atu6184 0.72 -0.4
201,496 - Atu6184 0.77 +0.1
201,503 + Atu6184 0.77 -0.0
201,596 + Atu6184 0.82 +0.1
201,596 + Atu6184 0.82 -0.8
201,604 - Atu6184 0.82 -0.3
201,604 - Atu6184 0.82 -0.6
201,610 + Atu6184 0.82 -1.0
201,617 - Atu6184 0.83 -0.8
201,617 - Atu6184 0.83 -0.6
201,643 + Atu6184 0.84 +0.2
201,643 + Atu6184 0.84 -0.0
201,643 + Atu6184 0.84 -0.5
201,650 - Atu6184 0.84 -0.5
201,651 - Atu6184 0.84 -0.2
201,651 - Atu6184 0.84 -0.4
201,651 - Atu6184 0.84 +2.1
201,683 + Atu6184 0.86 -1.0
201,685 + Atu6184 0.86 -0.2
201,685 + Atu6184 0.86 -0.3
201,693 - Atu6184 0.87 -0.3
201,693 - Atu6184 0.87 -1.3
201,724 + Atu6184 0.88 -0.5
201,740 - Atu6184 0.89 -0.8
201,750 - Atu6184 0.89 -0.6
201,797 - -0.2
201,797 - +0.2
201,797 - -0.3
201,797 - -0.5
201,804 - +0.5
201,906 - -0.9
201,929 + -0.3
201,937 - -0.4
201,960 - -0.4
201,962 + -0.0
201,969 - -0.1
201,972 + -0.5
202,035 + -0.5
202,101 + -1.0
202,126 + +0.7
202,153 - -0.7
202,157 + -0.0
202,158 - -0.6
202,162 + -1.7
202,206 - -0.4
202,208 - -0.6
202,226 + -0.3
202,267 + -0.4
202,277 + -0.4
202,285 - -0.9
202,295 - -0.4
202,325 - -0.5
202,334 - Atu6185 0.10 -0.1
202,339 + Atu6185 0.11 -0.3
202,374 - Atu6185 0.12 -0.6
202,406 + Atu6185 0.13 +0.2
202,406 - Atu6185 0.13 -0.2
202,428 - Atu6185 0.14 -0.1
202,443 + Atu6185 0.15 -0.1
202,449 + Atu6185 0.15 -1.2
202,462 + Atu6185 0.15 +1.5
202,476 - Atu6185 0.16 -0.7
202,491 - Atu6185 0.17 -0.5
202,520 + Atu6185 0.18 -0.8
202,550 + Atu6185 0.19 -0.1
202,553 - Atu6185 0.19 -0.6
202,557 - Atu6185 0.19 +0.0
202,582 + Atu6185 0.20 +0.3
202,582 + Atu6185 0.20 +4.7
202,625 + Atu6185 0.22 -1.5
202,633 - Atu6185 0.22 -0.4
202,675 - Atu6185 0.24 -0.5
202,689 + Atu6185 0.24 -0.6
202,697 - Atu6185 0.25 +0.1
202,706 - Atu6185 0.25 -0.4
202,708 + Atu6185 0.25 -0.0
202,716 - Atu6185 0.25 -0.3
202,726 + Atu6185 0.26 -0.4
202,763 + Atu6185 0.27 -0.3
202,773 + Atu6185 0.28 -0.4
202,799 - Atu6185 0.29 +0.2
202,803 - Atu6185 0.29 -0.3
202,840 - Atu6185 0.30 -0.3
202,840 - Atu6185 0.30 -0.6
202,840 - Atu6185 0.30 +0.1
202,842 - Atu6185 0.30 -0.4
202,874 + Atu6185 0.32 -0.5
202,885 + Atu6185 0.32 -0.8
202,915 + Atu6185 0.33 -0.7
202,920 + Atu6185 0.34 -1.3
202,940 + Atu6185 0.34 -0.1

Or see this region's nucleotide sequence