Strain Fitness in Agrobacterium fabrum C58 around Atu6183

Experiment: Acetosyringone 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6182 and Atu6183 are separated by 14 nucleotidesAtu6183 and Atu6184 are separated by 73 nucleotides Atu6182: Atu6182 - endonuclease, at 196,503 to 197,846 Atu6182 Atu6183: Atu6183 - virA/G regulated protein, at 197,861 to 199,882 Atu6183 Atu6184: Atu6184 - virA/G regulated protein, at 199,956 to 201,962 Atu6184 Position (kb) 197 198 199 200Strain fitness (log2 ratio) -2 -1 0 1at 196.880 kb on - strand, within Atu6182at 196.899 kb on + strand, within Atu6182at 196.899 kb on + strand, within Atu6182at 196.902 kb on - strand, within Atu6182at 196.976 kb on - strand, within Atu6182at 197.032 kb on + strand, within Atu6182at 197.034 kb on - strand, within Atu6182at 197.040 kb on - strand, within Atu6182at 197.055 kb on - strand, within Atu6182at 197.075 kb on + strand, within Atu6182at 197.075 kb on + strand, within Atu6182at 197.083 kb on + strand, within Atu6182at 197.083 kb on - strand, within Atu6182at 197.091 kb on - strand, within Atu6182at 197.121 kb on + strand, within Atu6182at 197.121 kb on + strand, within Atu6182at 197.154 kb on - strand, within Atu6182at 197.156 kb on + strand, within Atu6182at 197.193 kb on + strand, within Atu6182at 197.230 kb on + strand, within Atu6182at 197.291 kb on + strand, within Atu6182at 197.353 kb on + strand, within Atu6182at 197.418 kb on + strand, within Atu6182at 197.425 kb on + strand, within Atu6182at 197.426 kb on - strand, within Atu6182at 197.430 kb on + strand, within Atu6182at 197.445 kb on - strand, within Atu6182at 197.541 kb on + strand, within Atu6182at 197.549 kb on - strand, within Atu6182at 197.551 kb on + strand, within Atu6182at 197.574 kb on - strand, within Atu6182at 197.607 kb on + strand, within Atu6182at 197.618 kb on - strand, within Atu6182at 197.637 kb on - strand, within Atu6182at 197.658 kb on - strand, within Atu6182at 197.684 kb on + strand, within Atu6182at 197.687 kb on - strand, within Atu6182at 197.692 kb on - strand, within Atu6182at 197.692 kb on - strand, within Atu6182at 197.692 kb on - strand, within Atu6182at 197.854 kb on - strandat 197.926 kb on + strandat 197.926 kb on + strandat 197.932 kb on - strandat 197.934 kb on - strandat 197.934 kb on - strandat 197.934 kb on - strandat 197.939 kb on - strandat 198.005 kb on + strandat 198.179 kb on + strand, within Atu6183at 198.179 kb on + strand, within Atu6183at 198.187 kb on + strand, within Atu6183at 198.187 kb on + strand, within Atu6183at 198.187 kb on - strand, within Atu6183at 198.266 kb on + strand, within Atu6183at 198.293 kb on - strand, within Atu6183at 198.437 kb on + strand, within Atu6183at 198.438 kb on - strand, within Atu6183at 198.438 kb on - strand, within Atu6183at 198.445 kb on - strand, within Atu6183at 198.450 kb on - strand, within Atu6183at 198.458 kb on + strand, within Atu6183at 198.458 kb on + strand, within Atu6183at 198.466 kb on - strand, within Atu6183at 198.466 kb on - strand, within Atu6183at 198.466 kb on - strand, within Atu6183at 198.478 kb on - strand, within Atu6183at 198.514 kb on + strand, within Atu6183at 198.519 kb on + strand, within Atu6183at 198.519 kb on + strand, within Atu6183at 198.525 kb on - strand, within Atu6183at 198.527 kb on - strand, within Atu6183at 198.527 kb on - strand, within Atu6183at 198.609 kb on + strand, within Atu6183at 198.659 kb on + strand, within Atu6183at 198.666 kb on + strand, within Atu6183at 198.667 kb on - strand, within Atu6183at 198.727 kb on + strand, within Atu6183at 198.727 kb on + strand, within Atu6183at 198.761 kb on - strand, within Atu6183at 198.767 kb on + strand, within Atu6183at 198.767 kb on + strand, within Atu6183at 198.775 kb on - strand, within Atu6183at 198.780 kb on - strand, within Atu6183at 198.799 kb on + strand, within Atu6183at 198.799 kb on + strand, within Atu6183at 198.807 kb on - strand, within Atu6183at 198.816 kb on + strand, within Atu6183at 198.817 kb on - strand, within Atu6183at 198.838 kb on - strand, within Atu6183at 198.861 kb on + strand, within Atu6183at 198.861 kb on + strand, within Atu6183at 198.861 kb on + strand, within Atu6183at 198.869 kb on - strand, within Atu6183at 198.869 kb on - strand, within Atu6183at 198.869 kb on - strand, within Atu6183at 198.879 kb on - strand, within Atu6183at 198.904 kb on + strand, within Atu6183at 198.981 kb on - strand, within Atu6183at 199.063 kb on - strand, within Atu6183at 199.073 kb on + strand, within Atu6183at 199.073 kb on + strand, within Atu6183at 199.080 kb on + strand, within Atu6183at 199.081 kb on + strand, within Atu6183at 199.081 kb on - strand, within Atu6183at 199.083 kb on + strand, within Atu6183at 199.089 kb on - strand, within Atu6183at 199.089 kb on - strand, within Atu6183at 199.091 kb on - strand, within Atu6183at 199.160 kb on + strand, within Atu6183at 199.162 kb on + strand, within Atu6183at 199.170 kb on + strand, within Atu6183at 199.173 kb on - strand, within Atu6183at 199.209 kb on + strand, within Atu6183at 199.255 kb on - strand, within Atu6183at 199.286 kb on - strand, within Atu6183at 199.286 kb on - strand, within Atu6183at 199.291 kb on - strand, within Atu6183at 199.326 kb on - strand, within Atu6183at 199.370 kb on + strand, within Atu6183at 199.476 kb on + strand, within Atu6183at 199.484 kb on + strand, within Atu6183at 199.484 kb on - strand, within Atu6183at 199.488 kb on + strand, within Atu6183at 199.502 kb on - strand, within Atu6183at 199.617 kb on + strand, within Atu6183at 199.617 kb on + strand, within Atu6183at 199.617 kb on + strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.625 kb on - strand, within Atu6183at 199.676 kb on + strand, within Atu6183at 199.682 kb on + strandat 199.682 kb on + strandat 199.684 kb on - strandat 199.684 kb on - strandat 199.684 kb on - strandat 199.735 kb on + strandat 199.735 kb on + strandat 199.834 kb on + strandat 199.834 kb on + strandat 199.834 kb on + strandat 199.834 kb on + strandat 199.840 kb on - strandat 199.842 kb on - strandat 199.842 kb on - strandat 199.842 kb on - strandat 199.842 kb on - strandat 199.896 kb on - strandat 199.908 kb on - strandat 199.978 kb on - strandat 199.990 kb on - strandat 200.120 kb on + strandat 200.128 kb on - strandat 200.128 kb on - strandat 200.273 kb on - strand, within Atu6184at 200.334 kb on - strand, within Atu6184at 200.372 kb on + strand, within Atu6184at 200.380 kb on - strand, within Atu6184at 200.444 kb on + strand, within Atu6184at 200.444 kb on - strand, within Atu6184at 200.450 kb on + strand, within Atu6184at 200.497 kb on + strand, within Atu6184at 200.503 kb on - strand, within Atu6184at 200.581 kb on - strand, within Atu6184at 200.658 kb on + strand, within Atu6184at 200.663 kb on + strand, within Atu6184at 200.671 kb on - strand, within Atu6184at 200.673 kb on + strand, within Atu6184at 200.725 kb on + strand, within Atu6184at 200.749 kb on + strand, within Atu6184at 200.825 kb on - strand, within Atu6184

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 1.25 mM
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196,880 - Atu6182 0.28 -0.3
196,899 + Atu6182 0.29 -0.2
196,899 + Atu6182 0.29 -0.8
196,902 - Atu6182 0.30 -0.3
196,976 - Atu6182 0.35 -0.9
197,032 + Atu6182 0.39 -0.3
197,034 - Atu6182 0.40 -0.6
197,040 - Atu6182 0.40 -0.5
197,055 - Atu6182 0.41 -0.6
197,075 + Atu6182 0.43 -0.2
197,075 + Atu6182 0.43 -0.5
197,083 + Atu6182 0.43 -0.5
197,083 - Atu6182 0.43 -0.4
197,091 - Atu6182 0.44 -0.5
197,121 + Atu6182 0.46 -0.3
197,121 + Atu6182 0.46 -0.2
197,154 - Atu6182 0.48 +0.9
197,156 + Atu6182 0.49 -0.1
197,193 + Atu6182 0.51 -0.1
197,230 + Atu6182 0.54 -0.5
197,291 + Atu6182 0.59 -0.2
197,353 + Atu6182 0.63 -0.4
197,418 + Atu6182 0.68 +1.2
197,425 + Atu6182 0.69 -0.3
197,426 - Atu6182 0.69 -0.5
197,430 + Atu6182 0.69 -0.6
197,445 - Atu6182 0.70 -0.8
197,541 + Atu6182 0.77 +1.2
197,549 - Atu6182 0.78 -0.5
197,551 + Atu6182 0.78 -0.5
197,574 - Atu6182 0.80 -0.5
197,607 + Atu6182 0.82 -0.5
197,618 - Atu6182 0.83 -0.7
197,637 - Atu6182 0.84 +0.6
197,658 - Atu6182 0.86 +0.0
197,684 + Atu6182 0.88 -0.3
197,687 - Atu6182 0.88 -0.3
197,692 - Atu6182 0.88 -0.5
197,692 - Atu6182 0.88 -0.7
197,692 - Atu6182 0.88 -0.5
197,854 - +0.2
197,926 + -0.7
197,926 + -0.5
197,932 - +0.8
197,934 - -0.7
197,934 - -0.1
197,934 - -0.0
197,939 - -0.7
198,005 + -1.3
198,179 + Atu6183 0.16 +0.1
198,179 + Atu6183 0.16 -0.7
198,187 + Atu6183 0.16 -0.2
198,187 + Atu6183 0.16 -0.4
198,187 - Atu6183 0.16 +1.1
198,266 + Atu6183 0.20 -0.9
198,293 - Atu6183 0.21 +0.2
198,437 + Atu6183 0.28 -0.6
198,438 - Atu6183 0.29 -0.5
198,438 - Atu6183 0.29 -0.4
198,445 - Atu6183 0.29 -0.8
198,450 - Atu6183 0.29 -0.6
198,458 + Atu6183 0.30 -0.9
198,458 + Atu6183 0.30 -0.8
198,466 - Atu6183 0.30 -0.5
198,466 - Atu6183 0.30 -1.4
198,466 - Atu6183 0.30 +0.1
198,478 - Atu6183 0.31 -0.4
198,514 + Atu6183 0.32 +0.2
198,519 + Atu6183 0.33 -0.2
198,519 + Atu6183 0.33 -0.3
198,525 - Atu6183 0.33 -0.4
198,527 - Atu6183 0.33 +0.2
198,527 - Atu6183 0.33 -0.6
198,609 + Atu6183 0.37 -0.3
198,659 + Atu6183 0.39 -0.0
198,666 + Atu6183 0.40 -1.1
198,667 - Atu6183 0.40 -1.5
198,727 + Atu6183 0.43 -0.2
198,727 + Atu6183 0.43 -0.6
198,761 - Atu6183 0.45 -0.4
198,767 + Atu6183 0.45 -0.6
198,767 + Atu6183 0.45 -0.9
198,775 - Atu6183 0.45 -0.1
198,780 - Atu6183 0.45 -0.2
198,799 + Atu6183 0.46 -0.7
198,799 + Atu6183 0.46 -0.6
198,807 - Atu6183 0.47 -0.6
198,816 + Atu6183 0.47 -0.0
198,817 - Atu6183 0.47 -0.6
198,838 - Atu6183 0.48 -0.6
198,861 + Atu6183 0.49 +0.4
198,861 + Atu6183 0.49 -0.1
198,861 + Atu6183 0.49 -0.3
198,869 - Atu6183 0.50 -0.3
198,869 - Atu6183 0.50 -0.5
198,869 - Atu6183 0.50 -0.4
198,879 - Atu6183 0.50 -0.5
198,904 + Atu6183 0.52 -0.7
198,981 - Atu6183 0.55 -1.5
199,063 - Atu6183 0.59 +0.8
199,073 + Atu6183 0.60 -0.2
199,073 + Atu6183 0.60 -0.2
199,080 + Atu6183 0.60 -2.7
199,081 + Atu6183 0.60 -0.5
199,081 - Atu6183 0.60 +0.4
199,083 + Atu6183 0.60 -0.8
199,089 - Atu6183 0.61 -0.3
199,089 - Atu6183 0.61 -0.2
199,091 - Atu6183 0.61 -0.3
199,160 + Atu6183 0.64 -0.8
199,162 + Atu6183 0.64 -0.3
199,170 + Atu6183 0.65 -0.4
199,173 - Atu6183 0.65 +0.1
199,209 + Atu6183 0.67 -0.2
199,255 - Atu6183 0.69 -0.5
199,286 - Atu6183 0.70 -0.5
199,286 - Atu6183 0.70 -0.3
199,291 - Atu6183 0.71 -0.8
199,326 - Atu6183 0.72 -0.2
199,370 + Atu6183 0.75 -0.5
199,476 + Atu6183 0.80 -1.0
199,484 + Atu6183 0.80 -0.1
199,484 - Atu6183 0.80 +0.0
199,488 + Atu6183 0.80 -0.7
199,502 - Atu6183 0.81 +0.1
199,617 + Atu6183 0.87 -0.4
199,617 + Atu6183 0.87 -0.1
199,617 + Atu6183 0.87 -0.3
199,625 - Atu6183 0.87 -1.3
199,625 - Atu6183 0.87 -0.7
199,625 - Atu6183 0.87 +0.1
199,625 - Atu6183 0.87 -0.5
199,625 - Atu6183 0.87 -0.5
199,676 + Atu6183 0.90 -1.3
199,682 + -0.4
199,682 + -0.2
199,684 - -0.2
199,684 - -0.5
199,684 - -0.4
199,735 + -0.7
199,735 + -1.0
199,834 + -0.3
199,834 + +0.0
199,834 + +0.9
199,834 + -0.4
199,840 - -0.4
199,842 - -0.2
199,842 - -0.1
199,842 - -0.7
199,842 - +0.8
199,896 - -0.1
199,908 - -0.4
199,978 - -0.0
199,990 - -0.1
200,120 + -0.9
200,128 - -0.7
200,128 - -0.4
200,273 - Atu6184 0.16 -0.2
200,334 - Atu6184 0.19 -0.4
200,372 + Atu6184 0.21 -0.3
200,380 - Atu6184 0.21 -0.6
200,444 + Atu6184 0.24 -0.2
200,444 - Atu6184 0.24 -0.4
200,450 + Atu6184 0.25 -0.4
200,497 + Atu6184 0.27 -0.4
200,503 - Atu6184 0.27 -0.3
200,581 - Atu6184 0.31 -0.4
200,658 + Atu6184 0.35 +0.4
200,663 + Atu6184 0.35 -0.6
200,671 - Atu6184 0.36 -0.8
200,673 + Atu6184 0.36 -0.6
200,725 + Atu6184 0.38 -0.3
200,749 + Atu6184 0.40 -0.4
200,825 - Atu6184 0.43 -0.2

Or see this region's nucleotide sequence