Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0791 and Atu0792 are separated by 45 nucleotides Atu0792 and Atu8136 are separated by 183 nucleotides Atu8136 and Atu0794 are separated by 236 nucleotides
Atu0791: Atu0791 - transcriptional regulator, GntR family, at 788,044 to 788,724
Atu0791
Atu0792: Atu0792 - hypothetical protein, at 788,770 to 789,234
Atu0792
Atu8136: Atu8136 - hypothetical protein, at 789,418 to 790,518
Atu8136
Atu0794: Atu0794 - cell cycle regulated site-specific DNA-methyltransferase protein, at 790,755 to 791,900
Atu0794
Position (kb) 789
790
791 Strain fitness (log2 ratio) -1
0
1 at 788.434 kb on - strand, within Atu0791 at 788.457 kb on + strand, within Atu0791 at 788.465 kb on - strand, within Atu0791 at 788.555 kb on + strand, within Atu0791 at 788.575 kb on + strand, within Atu0791 at 788.581 kb on - strand, within Atu0791 at 788.727 kb on - strand at 788.732 kb on - strand at 788.770 kb on + strand at 788.790 kb on + strand at 788.790 kb on + strand at 788.790 kb on + strand at 788.790 kb on + strand at 788.798 kb on - strand at 788.896 kb on - strand, within Atu0792 at 788.898 kb on + strand, within Atu0792 at 788.901 kb on - strand, within Atu0792 at 788.929 kb on - strand, within Atu0792 at 788.933 kb on + strand, within Atu0792 at 789.051 kb on - strand, within Atu0792 at 789.103 kb on - strand, within Atu0792 at 789.328 kb on + strand at 789.328 kb on + strand at 789.328 kb on + strand at 789.409 kb on - strand at 789.452 kb on + strand at 789.732 kb on + strand, within Atu8136 at 789.738 kb on - strand, within Atu8136 at 789.787 kb on + strand, within Atu8136 at 789.819 kb on + strand, within Atu8136 at 789.990 kb on + strand, within Atu8136 at 789.998 kb on - strand, within Atu8136 at 790.183 kb on + strand, within Atu8136 at 790.247 kb on - strand, within Atu8136 at 790.389 kb on - strand, within Atu8136 at 790.403 kb on + strand, within Atu8136 at 790.403 kb on + strand, within Atu8136 at 790.403 kb on + strand, within Atu8136 at 790.403 kb on + strand, within Atu8136 at 790.411 kb on - strand at 790.411 kb on - strand at 790.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 788,434 - Atu0791 0.57 -0.0 788,457 + Atu0791 0.61 +0.2 788,465 - Atu0791 0.62 -0.4 788,555 + Atu0791 0.75 +0.6 788,575 + Atu0791 0.78 +1.1 788,581 - Atu0791 0.79 +0.0 788,727 - +0.5 788,732 - -0.0 788,770 + -0.5 788,790 + +0.3 788,790 + +0.8 788,790 + +0.1 788,790 + -0.1 788,798 - +0.4 788,896 - Atu0792 0.27 -1.1 788,898 + Atu0792 0.28 +0.4 788,901 - Atu0792 0.28 +0.2 788,929 - Atu0792 0.34 +0.3 788,933 + Atu0792 0.35 -0.2 789,051 - Atu0792 0.60 +1.0 789,103 - Atu0792 0.72 -1.7 789,328 + -0.3 789,328 + -0.1 789,328 + +0.5 789,409 - -0.3 789,452 + +0.4 789,732 + Atu8136 0.29 -0.3 789,738 - Atu8136 0.29 +0.8 789,787 + Atu8136 0.34 +0.2 789,819 + Atu8136 0.36 -0.1 789,990 + Atu8136 0.52 +0.2 789,998 - Atu8136 0.53 -0.1 790,183 + Atu8136 0.69 +0.0 790,247 - Atu8136 0.75 +0.2 790,389 - Atu8136 0.88 +0.0 790,403 + Atu8136 0.89 +1.1 790,403 + Atu8136 0.89 +0.3 790,403 + Atu8136 0.89 +0.6 790,403 + Atu8136 0.89 +0.6 790,411 - -0.1 790,411 - +0.4 790,613 - -0.6
Or see this region's nucleotide sequence