Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0453 and Atu0454 overlap by 1 nucleotides Atu0454 and Atu8126 are separated by 208 nucleotides Atu8126 and Atu8127 are separated by 12 nucleotides
Atu0453: Atu0453 - hypothetical protein, at 448,012 to 448,758
Atu0453
Atu0454: Atu0454 - hypothetical protein, at 448,758 to 449,309
Atu0454
Atu8126: Atu8126 - putative phage tail protein I, at 449,518 to 450,183
Atu8126
Atu8127: Atu8127 - hypothetical protein, at 450,196 to 452,397
Atu8127
Position (kb) 449
450
451 Strain fitness (log2 ratio) -1
0
1
2 at 448.522 kb on - strand, within Atu0453 at 448.548 kb on + strand, within Atu0453 at 448.661 kb on - strand, within Atu0453 at 448.716 kb on + strand at 448.738 kb on + strand at 448.746 kb on - strand at 448.747 kb on + strand at 448.781 kb on - strand at 448.880 kb on - strand, within Atu0454 at 448.882 kb on + strand, within Atu0454 at 448.890 kb on - strand, within Atu0454 at 448.891 kb on + strand, within Atu0454 at 448.900 kb on - strand, within Atu0454 at 448.905 kb on + strand, within Atu0454 at 448.923 kb on - strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.981 kb on - strand, within Atu0454 at 448.981 kb on - strand, within Atu0454 at 449.227 kb on + strand, within Atu0454 at 449.288 kb on - strand at 449.294 kb on - strand at 449.342 kb on - strand at 449.457 kb on + strand at 449.472 kb on - strand at 449.525 kb on + strand at 449.525 kb on + strand at 449.533 kb on - strand at 449.533 kb on - strand at 449.606 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.775 kb on - strand, within Atu8126 at 449.868 kb on - strand, within Atu8126 at 449.920 kb on + strand, within Atu8126 at 449.930 kb on - strand, within Atu8126 at 449.975 kb on + strand, within Atu8126 at 450.109 kb on + strand, within Atu8126 at 450.110 kb on + strand, within Atu8126 at 450.177 kb on + strand at 450.179 kb on + strand at 450.180 kb on - strand at 450.191 kb on + strand at 450.192 kb on - strand at 450.272 kb on + strand at 450.308 kb on + strand at 450.311 kb on - strand at 450.411 kb on + strand at 450.421 kb on + strand, within Atu8127 at 450.455 kb on + strand, within Atu8127 at 450.458 kb on - strand, within Atu8127 at 450.463 kb on - strand, within Atu8127 at 450.465 kb on + strand, within Atu8127 at 450.465 kb on + strand, within Atu8127 at 450.473 kb on - strand, within Atu8127 at 450.478 kb on + strand, within Atu8127 at 450.486 kb on - strand, within Atu8127 at 450.570 kb on - strand, within Atu8127 at 450.660 kb on - strand, within Atu8127 at 450.675 kb on - strand, within Atu8127 at 450.687 kb on + strand, within Atu8127 at 450.731 kb on + strand, within Atu8127 at 450.751 kb on + strand, within Atu8127 at 450.759 kb on - strand, within Atu8127 at 450.834 kb on + strand, within Atu8127 at 450.839 kb on + strand, within Atu8127 at 450.893 kb on + strand, within Atu8127 at 450.998 kb on + strand, within Atu8127 at 451.119 kb on - strand, within Atu8127
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 448,522 - Atu0453 0.68 +0.3 448,548 + Atu0453 0.72 +0.3 448,661 - Atu0453 0.87 +0.1 448,716 + +0.1 448,738 + +0.5 448,746 - +0.3 448,747 + -0.2 448,781 - -0.4 448,880 - Atu0454 0.22 +0.4 448,882 + Atu0454 0.22 +0.3 448,890 - Atu0454 0.24 +0.0 448,891 + Atu0454 0.24 -0.5 448,900 - Atu0454 0.26 +0.2 448,905 + Atu0454 0.27 +1.8 448,923 - Atu0454 0.30 +0.0 448,973 + Atu0454 0.39 +0.3 448,973 + Atu0454 0.39 -0.7 448,973 + Atu0454 0.39 +0.0 448,981 - Atu0454 0.40 -0.3 448,981 - Atu0454 0.40 -0.2 449,227 + Atu0454 0.85 -0.2 449,288 - -0.0 449,294 - +0.0 449,342 - +0.2 449,457 + +0.8 449,472 - +0.5 449,525 + +0.1 449,525 + +0.0 449,533 - +2.0 449,533 - +0.1 449,606 - Atu8126 0.13 -0.3 449,622 - Atu8126 0.16 +1.4 449,622 - Atu8126 0.16 +1.4 449,622 - Atu8126 0.16 +1.4 449,775 - Atu8126 0.39 +0.3 449,868 - Atu8126 0.53 +0.9 449,920 + Atu8126 0.60 +0.1 449,930 - Atu8126 0.62 +0.8 449,975 + Atu8126 0.69 -0.0 450,109 + Atu8126 0.89 +0.5 450,110 + Atu8126 0.89 -1.0 450,177 + +0.1 450,179 + -0.2 450,180 - +0.2 450,191 + -0.1 450,192 - +0.1 450,272 + +0.0 450,308 + +1.5 450,311 - +0.4 450,411 + +0.5 450,421 + Atu8127 0.10 +0.4 450,455 + Atu8127 0.12 -0.3 450,458 - Atu8127 0.12 -0.0 450,463 - Atu8127 0.12 -0.4 450,465 + Atu8127 0.12 -0.0 450,465 + Atu8127 0.12 -1.1 450,473 - Atu8127 0.13 +0.4 450,478 + Atu8127 0.13 +0.4 450,486 - Atu8127 0.13 +1.4 450,570 - Atu8127 0.17 +0.7 450,660 - Atu8127 0.21 -1.2 450,675 - Atu8127 0.22 +0.4 450,687 + Atu8127 0.22 +0.0 450,731 + Atu8127 0.24 -0.6 450,751 + Atu8127 0.25 +0.2 450,759 - Atu8127 0.26 +0.1 450,834 + Atu8127 0.29 +0.4 450,839 + Atu8127 0.29 +0.1 450,893 + Atu8127 0.32 -0.0 450,998 + Atu8127 0.36 +0.5 451,119 - Atu8127 0.42 +0.2
Or see this region's nucleotide sequence