Strain Fitness in Agrobacterium fabrum C58 around Atu8096

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,877,264	-				-0.3
1,877,264	-				-0.5
1,877,319	-				-0.5
1,877,319	-				+0.4
1,877,319	-				+0.7
1,877,319	-				-0.4
1,877,329	-				+0.0
1,877,373	+				+1.0
1,877,381	-				-0.3
1,877,403	-				-0.2
1,877,419	+		Atu4714	0.12	-0.6
1,877,447	+		Atu4714	0.18	-0.3
1,877,455	-		Atu4714	0.19	-0.1
1,877,593	-		Atu4714	0.47	-0.6
1,877,613	-		Atu4714	0.50	-0.3
1,877,681	+		Atu4714	0.64	-0.6
1,877,681	+		Atu4714	0.64	+0.0
1,877,689	-		Atu4714	0.65	+0.1
1,877,799	-		Atu4714	0.87	-0.1
1,877,815	+				-1.8
1,877,822	+				+1.4
1,877,830	-				+0.0
1,877,830	-				+0.1
1,877,873	+				-0.5
1,877,957	+		Atu8199	0.28	-0.2
1,877,978	-		Atu8199	0.34	-0.1
1,878,001	+		Atu8199	0.41	+1.1
1,878,026	+		Atu8199	0.48	+0.7
1,878,067	+		Atu8199	0.59	-0.6
1,878,082	-		Atu8199	0.64	+0.1
1,878,084	-		Atu8199	0.64	-0.1
1,878,090	+		Atu8199	0.66	+0.2
1,878,097	+		Atu8199	0.68	-0.1
1,878,097	+		Atu8199	0.68	+0.1
1,878,105	-		Atu8199	0.70	+0.1
1,878,119	+		Atu8199	0.74	-0.1
1,878,205	-				-0.9
1,878,308	-		Atu8096	0.52	-0.9
1,878,418	-				-0.0
1,878,472	+				-0.1
1,878,494	-				-0.5
1,878,500	+				+0.2
1,878,579	-				+0.5
1,878,684	+		Atu4716	0.10	-0.1
1,878,704	+		Atu4716	0.11	-0.0
1,878,724	-		Atu4716	0.13	-0.4
1,878,730	+		Atu4716	0.13	-0.2
1,878,763	-		Atu4716	0.15	+0.2
1,878,823	-		Atu4716	0.20	+0.1
1,878,868	+		Atu4716	0.23	+0.2
1,878,868	+		Atu4716	0.23	+0.6
1,878,878	+		Atu4716	0.23	-0.6
1,878,907	+		Atu4716	0.25	+0.0
1,878,907	+		Atu4716	0.25	-0.0
1,878,907	+		Atu4716	0.25	+0.1
1,878,907	+		Atu4716	0.25	-1.1
1,878,915	-		Atu4716	0.26	+0.6
1,878,951	+		Atu4716	0.28	-0.2
1,878,959	-		Atu4716	0.29	+0.3
1,878,984	-		Atu4716	0.30	+0.1
1,879,002	+		Atu4716	0.32	-0.4
1,879,017	-		Atu4716	0.33	-0.3
1,879,046	+		Atu4716	0.35	+0.2
1,879,156	-		Atu4716	0.42	+0.6
1,879,164	-		Atu4716	0.43	-0.7
1,879,209	-		Atu4716	0.46	+0.7
1,879,234	-		Atu4716	0.47	-0.2
1,879,278	-		Atu4716	0.50	-1.1
1,879,292	+		Atu4716	0.51	+0.4