Strain Fitness in Agrobacterium fabrum C58 around Atu8083

Experiment: Acetosyringone 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0450 and Atu8125 are separated by 244 nucleotidesAtu8125 and Atu8083 are separated by 82 nucleotidesAtu8083 and Atu0452 are separated by 140 nucleotides Atu0450: Atu0450 - transcription antitermination protein, at 444,726 to 445,292 Atu0450 Atu8125: Atu8125 - hypothetical protein, at 445,537 to 446,106 Atu8125 Atu8083: Atu8083 - hypothetical protein, at 446,189 to 447,001 Atu8083 Atu0452: Atu0452 - hypothetical protein, at 447,142 to 447,747 Atu0452 Position (kb) 446 447 448Strain fitness (log2 ratio) -1 0 1 2at 445.224 kb on - strand, within Atu0450at 445.227 kb on - strand, within Atu0450at 445.265 kb on - strandat 445.267 kb on + strandat 445.275 kb on - strandat 445.292 kb on + strandat 445.300 kb on - strandat 445.300 kb on - strandat 445.305 kb on - strandat 445.443 kb on + strandat 445.481 kb on + strandat 445.508 kb on + strandat 445.571 kb on + strandat 445.624 kb on + strand, within Atu8125at 445.745 kb on + strand, within Atu8125at 445.871 kb on + strand, within Atu8125at 445.874 kb on - strand, within Atu8125at 445.879 kb on - strand, within Atu8125at 445.889 kb on + strand, within Atu8125at 445.907 kb on + strand, within Atu8125at 445.934 kb on + strand, within Atu8125at 445.939 kb on + strand, within Atu8125at 445.947 kb on - strand, within Atu8125at 445.969 kb on + strand, within Atu8125at 445.977 kb on - strand, within Atu8125at 445.979 kb on - strand, within Atu8125at 445.993 kb on - strand, within Atu8125at 446.068 kb on - strandat 446.126 kb on + strandat 446.126 kb on + strandat 446.126 kb on + strandat 446.134 kb on - strandat 446.153 kb on + strandat 446.165 kb on - strandat 446.193 kb on - strandat 446.217 kb on - strandat 446.224 kb on + strandat 446.288 kb on - strand, within Atu8083at 446.303 kb on + strand, within Atu8083at 446.309 kb on + strand, within Atu8083at 446.333 kb on - strand, within Atu8083at 446.353 kb on + strand, within Atu8083at 446.466 kb on - strand, within Atu8083at 446.509 kb on - strand, within Atu8083at 446.510 kb on + strand, within Atu8083at 446.540 kb on - strand, within Atu8083at 446.544 kb on + strand, within Atu8083at 446.550 kb on - strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.589 kb on + strand, within Atu8083at 446.607 kb on - strand, within Atu8083at 446.607 kb on - strand, within Atu8083at 446.664 kb on - strand, within Atu8083at 446.685 kb on + strand, within Atu8083at 446.806 kb on + strand, within Atu8083at 446.806 kb on + strand, within Atu8083at 446.823 kb on + strand, within Atu8083at 446.849 kb on + strand, within Atu8083at 446.856 kb on + strand, within Atu8083at 446.863 kb on - strand, within Atu8083at 446.864 kb on - strand, within Atu8083at 446.869 kb on - strand, within Atu8083at 446.949 kb on + strandat 446.949 kb on + strandat 446.949 kb on + strandat 446.957 kb on - strandat 446.957 kb on - strandat 446.957 kb on - strandat 446.957 kb on - strandat 447.003 kb on - strandat 447.054 kb on - strandat 447.087 kb on + strandat 447.109 kb on + strandat 447.127 kb on - strandat 447.208 kb on - strand, within Atu0452at 447.208 kb on - strand, within Atu0452at 447.246 kb on - strand, within Atu0452at 447.336 kb on - strand, within Atu0452at 447.400 kb on - strand, within Atu0452at 447.413 kb on + strand, within Atu0452at 447.459 kb on + strand, within Atu0452at 447.477 kb on + strand, within Atu0452at 447.477 kb on + strand, within Atu0452at 447.477 kb on + strand, within Atu0452at 447.485 kb on - strand, within Atu0452at 447.491 kb on - strand, within Atu0452at 447.496 kb on - strand, within Atu0452at 447.512 kb on + strand, within Atu0452at 447.512 kb on + strand, within Atu0452at 447.512 kb on + strand, within Atu0452at 447.512 kb on + strand, within Atu0452at 447.520 kb on - strand, within Atu0452at 447.525 kb on - strand, within Atu0452at 447.648 kb on - strand, within Atu0452at 447.658 kb on + strand, within Atu0452at 447.730 kb on - strandat 447.730 kb on - strandat 447.760 kb on + strandat 447.772 kb on + strandat 447.850 kb on + strandat 447.859 kb on + strandat 447.874 kb on - strandat 447.931 kb on + strandat 447.978 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 5 mM
remove
445,224 - Atu0450 0.88 +0.5
445,227 - Atu0450 0.88 +0.2
445,265 - +0.4
445,267 + +0.0
445,275 - +0.0
445,292 + +0.6
445,300 - +0.0
445,300 - +0.5
445,305 - +0.3
445,443 + +0.1
445,481 + +0.2
445,508 + +0.3
445,571 + +0.2
445,624 + Atu8125 0.15 -0.1
445,745 + Atu8125 0.36 +0.7
445,871 + Atu8125 0.59 +0.2
445,874 - Atu8125 0.59 -0.0
445,879 - Atu8125 0.60 +0.9
445,889 + Atu8125 0.62 +0.9
445,907 + Atu8125 0.65 +0.5
445,934 + Atu8125 0.70 -0.4
445,939 + Atu8125 0.71 -0.6
445,947 - Atu8125 0.72 -0.3
445,969 + Atu8125 0.76 +0.3
445,977 - Atu8125 0.77 +0.3
445,979 - Atu8125 0.78 -0.0
445,993 - Atu8125 0.80 -0.2
446,068 - +0.2
446,126 + -0.4
446,126 + +0.8
446,126 + +0.3
446,134 - +0.4
446,153 + +0.8
446,165 - -0.1
446,193 - +0.9
446,217 - +0.4
446,224 + +0.2
446,288 - Atu8083 0.12 +0.1
446,303 + Atu8083 0.14 +0.2
446,309 + Atu8083 0.15 +0.7
446,333 - Atu8083 0.18 +0.2
446,353 + Atu8083 0.20 +0.5
446,466 - Atu8083 0.34 -1.2
446,509 - Atu8083 0.39 -0.2
446,510 + Atu8083 0.39 +0.5
446,540 - Atu8083 0.43 -0.1
446,544 + Atu8083 0.44 -0.0
446,550 - Atu8083 0.44 +2.0
446,554 + Atu8083 0.45 +0.7
446,554 + Atu8083 0.45 +0.0
446,554 + Atu8083 0.45 -0.0
446,554 + Atu8083 0.45 -0.4
446,589 + Atu8083 0.49 +1.0
446,607 - Atu8083 0.51 +0.3
446,607 - Atu8083 0.51 +0.5
446,664 - Atu8083 0.58 +0.2
446,685 + Atu8083 0.61 +0.2
446,806 + Atu8083 0.76 -0.2
446,806 + Atu8083 0.76 +0.3
446,823 + Atu8083 0.78 -0.3
446,849 + Atu8083 0.81 +1.3
446,856 + Atu8083 0.82 +0.3
446,863 - Atu8083 0.83 +0.5
446,864 - Atu8083 0.83 +1.1
446,869 - Atu8083 0.84 +0.0
446,949 + -0.2
446,949 + -0.6
446,949 + -0.5
446,957 - +0.2
446,957 - +0.9
446,957 - +0.0
446,957 - +0.1
447,003 - +0.2
447,054 - -0.0
447,087 + +0.4
447,109 + -0.7
447,127 - +0.4
447,208 - Atu0452 0.11 +1.1
447,208 - Atu0452 0.11 -0.4
447,246 - Atu0452 0.17 +0.4
447,336 - Atu0452 0.32 +0.6
447,400 - Atu0452 0.43 -0.0
447,413 + Atu0452 0.45 -0.2
447,459 + Atu0452 0.52 -0.2
447,477 + Atu0452 0.55 +0.2
447,477 + Atu0452 0.55 -0.7
447,477 + Atu0452 0.55 +0.2
447,485 - Atu0452 0.57 +0.1
447,491 - Atu0452 0.58 +0.3
447,496 - Atu0452 0.58 +0.5
447,512 + Atu0452 0.61 +0.2
447,512 + Atu0452 0.61 -0.1
447,512 + Atu0452 0.61 -0.4
447,512 + Atu0452 0.61 -0.2
447,520 - Atu0452 0.62 +0.2
447,525 - Atu0452 0.63 +0.4
447,648 - Atu0452 0.83 -0.5
447,658 + Atu0452 0.85 +0.4
447,730 - -0.0
447,730 - +0.8
447,760 + -0.1
447,772 + +0.5
447,850 + -0.1
447,859 + -0.3
447,874 - +1.3
447,931 + +0.2
447,978 - +0.4

Or see this region's nucleotide sequence