Strain Fitness in Agrobacterium fabrum C58 around Atu8019

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,746,057	+		Atu8164	0.72	+0.3
1,746,066	+		Atu8164	0.74	+0.5
1,746,103	+		Atu8164	0.85	-0.3
1,746,103	+		Atu8164	0.85	-0.0
1,746,103	+		Atu8164	0.85	-0.1
1,746,111	-		Atu8164	0.87	-1.0
1,746,299	+		Atu1762	0.17	+0.0
1,746,299	+		Atu1762	0.17	-0.8
1,746,299	+		Atu1762	0.17	+0.3
1,746,307	-		Atu1762	0.18	-0.5
1,746,307	-		Atu1762	0.18	+0.3
1,746,307	-		Atu1762	0.18	-0.5
1,746,307	-		Atu1762	0.18	-0.4
1,746,307	-		Atu1762	0.18	+0.0
1,746,307	-		Atu1762	0.18	-0.5
1,746,307	-		Atu1762	0.18	+0.8
1,746,307	-		Atu1762	0.18	-0.4
1,746,373	+		Atu1762	0.27	-0.1
1,746,396	+		Atu1762	0.30	-0.6
1,746,404	-		Atu1762	0.31	+1.0
1,746,458	+		Atu1762	0.38	-0.4
1,746,514	+		Atu1762	0.45	-0.7
1,746,530	+		Atu1762	0.48	+0.3
1,746,661	-		Atu1762	0.65	+0.2
1,746,665	+		Atu1762	0.65	+0.4
1,746,736	+		Atu1762	0.75	-0.5
1,746,837	-		Atu1762	0.88	+0.0
1,746,946	-				+2.5
1,747,015	+				-0.1
1,747,024	-				-1.0
1,747,024	-				+0.4
1,747,056	+		Atu8019	0.11	-0.7
1,747,085	+		Atu8019	0.29	-0.3
1,747,212	-				-0.6
1,747,416	+				+0.1
1,747,449	+				+0.5
1,747,449	+				-0.5
1,747,485	+		Atu1763	0.12	-0.5
1,747,673	-		Atu1763	0.36	+0.3
1,747,685	-		Atu1763	0.38	-0.3
1,747,713	+		Atu1763	0.41	+0.7
1,747,716	+		Atu1763	0.42	-0.2
1,747,723	-		Atu1763	0.43	-0.4
1,747,939	-		Atu1763	0.70	-0.6
1,747,950	-		Atu1763	0.72	+0.0
1,747,964	+		Atu1763	0.74	+1.2
1,747,979	+		Atu1763	0.76	+0.9
1,748,014	-		Atu1763	0.80	-0.4
1,748,017	+		Atu1763	0.80	-2.3
1,748,035	-		Atu1763	0.83	-0.0
1,748,128	+				-0.6
1,748,128	+				-0.3
1,748,128	+				-0.3
1,748,136	-				-0.6
1,748,192	-				+1.2
1,748,196	-				-0.3