Strain Fitness in Agrobacterium fabrum C58 around Atu6177

Experiment: Acetosyringone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6176 and Atu6177 are separated by 40 nucleotidesAtu6177 and Atu6178 are separated by 218 nucleotides Atu6176: Atu6176 - component of type IV secretion system, at 191,119 to 192,252 Atu6176 Atu6177: Atu6177 - component of type IV secretion system, at 192,293 to 193,327 Atu6177 Atu6178: Atu6178 - two component response regulator, at 193,546 to 194,307 Atu6178 Position (kb) 192 193 194Strain fitness (log2 ratio) -1 0 1at 191.299 kb on + strand, within Atu6176at 191.362 kb on - strand, within Atu6176at 191.363 kb on - strand, within Atu6176at 191.389 kb on + strand, within Atu6176at 191.413 kb on + strand, within Atu6176at 191.472 kb on + strand, within Atu6176at 191.472 kb on + strand, within Atu6176at 191.472 kb on + strand, within Atu6176at 191.480 kb on - strand, within Atu6176at 191.480 kb on - strand, within Atu6176at 191.480 kb on - strand, within Atu6176at 191.482 kb on + strand, within Atu6176at 191.490 kb on - strand, within Atu6176at 191.514 kb on - strand, within Atu6176at 191.550 kb on - strand, within Atu6176at 191.578 kb on + strand, within Atu6176at 191.611 kb on + strand, within Atu6176at 191.617 kb on - strand, within Atu6176at 191.625 kb on + strand, within Atu6176at 191.630 kb on + strand, within Atu6176at 191.638 kb on - strand, within Atu6176at 191.638 kb on - strand, within Atu6176at 191.643 kb on + strand, within Atu6176at 191.645 kb on - strand, within Atu6176at 191.714 kb on + strand, within Atu6176at 191.742 kb on + strand, within Atu6176at 191.742 kb on + strand, within Atu6176at 191.771 kb on + strand, within Atu6176at 191.779 kb on - strand, within Atu6176at 191.822 kb on + strand, within Atu6176at 191.917 kb on - strand, within Atu6176at 191.986 kb on - strand, within Atu6176at 191.993 kb on - strand, within Atu6176at 192.001 kb on - strand, within Atu6176at 192.055 kb on + strand, within Atu6176at 192.063 kb on - strand, within Atu6176at 192.063 kb on - strand, within Atu6176at 192.063 kb on - strand, within Atu6176at 192.072 kb on + strand, within Atu6176at 192.100 kb on + strand, within Atu6176at 192.100 kb on + strand, within Atu6176at 192.108 kb on - strand, within Atu6176at 192.197 kb on + strandat 192.202 kb on - strandat 192.269 kb on - strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.342 kb on + strandat 192.360 kb on + strandat 192.396 kb on + strandat 192.435 kb on - strand, within Atu6177at 192.495 kb on + strand, within Atu6177at 192.495 kb on + strand, within Atu6177at 192.505 kb on + strand, within Atu6177at 192.578 kb on - strand, within Atu6177at 192.593 kb on - strand, within Atu6177at 192.638 kb on + strand, within Atu6177at 192.664 kb on - strand, within Atu6177at 192.751 kb on - strand, within Atu6177at 192.762 kb on + strand, within Atu6177at 192.785 kb on + strand, within Atu6177at 192.800 kb on + strand, within Atu6177at 192.833 kb on + strand, within Atu6177at 192.834 kb on - strand, within Atu6177at 192.838 kb on + strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.915 kb on + strand, within Atu6177at 192.915 kb on + strand, within Atu6177at 192.923 kb on - strand, within Atu6177at 192.925 kb on + strand, within Atu6177at 192.945 kb on - strand, within Atu6177at 192.947 kb on + strand, within Atu6177at 192.981 kb on + strand, within Atu6177at 192.982 kb on + strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.994 kb on + strand, within Atu6177at 193.003 kb on + strand, within Atu6177at 193.005 kb on + strand, within Atu6177at 193.005 kb on + strand, within Atu6177at 193.013 kb on - strand, within Atu6177at 193.015 kb on + strand, within Atu6177at 193.056 kb on + strand, within Atu6177at 193.105 kb on - strand, within Atu6177at 193.175 kb on - strand, within Atu6177at 193.216 kb on + strand, within Atu6177at 193.216 kb on - strand, within Atu6177at 193.245 kb on + strandat 193.291 kb on - strandat 193.423 kb on - strandat 193.423 kb on - strandat 193.456 kb on - strandat 193.478 kb on - strandat 193.492 kb on + strandat 193.537 kb on - strandat 193.574 kb on - strandat 193.655 kb on + strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.663 kb on - strand, within Atu6178at 193.696 kb on + strand, within Atu6178at 193.696 kb on + strand, within Atu6178at 193.707 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.714 kb on - strand, within Atu6178at 193.895 kb on - strand, within Atu6178at 193.917 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.941 kb on + strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.949 kb on - strand, within Atu6178at 193.987 kb on + strand, within Atu6178at 194.031 kb on + strand, within Atu6178at 194.040 kb on + strand, within Atu6178at 194.041 kb on - strand, within Atu6178at 194.046 kb on + strand, within Atu6178at 194.060 kb on + strand, within Atu6178at 194.061 kb on + strand, within Atu6178at 194.108 kb on + strand, within Atu6178at 194.108 kb on + strand, within Atu6178at 194.109 kb on - strand, within Atu6178at 194.109 kb on - strand, within Atu6178at 194.129 kb on + strand, within Atu6178at 194.146 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on + strand, within Atu6178at 194.152 kb on - strand, within Atu6178at 194.152 kb on - strand, within Atu6178at 194.157 kb on - strand, within Atu6178at 194.165 kb on + strand, within Atu6178at 194.173 kb on - strand, within Atu6178at 194.216 kb on - strand, within Atu6178at 194.219 kb on + strand, within Atu6178at 194.219 kb on + strand, within Atu6178at 194.227 kb on - strand, within Atu6178at 194.227 kb on - strand, within Atu6178at 194.237 kb on - strandat 194.246 kb on + strandat 194.269 kb on + strandat 194.302 kb on + strandat 194.317 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 5 mM
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191,299 + Atu6176 0.16 +0.3
191,362 - Atu6176 0.21 +0.3
191,363 - Atu6176 0.22 +0.2
191,389 + Atu6176 0.24 +0.7
191,413 + Atu6176 0.26 +0.3
191,472 + Atu6176 0.31 +0.3
191,472 + Atu6176 0.31 +0.1
191,472 + Atu6176 0.31 -0.0
191,480 - Atu6176 0.32 +0.3
191,480 - Atu6176 0.32 +0.3
191,480 - Atu6176 0.32 -0.1
191,482 + Atu6176 0.32 -0.2
191,490 - Atu6176 0.33 +0.6
191,514 - Atu6176 0.35 +0.3
191,550 - Atu6176 0.38 +0.2
191,578 + Atu6176 0.40 -0.9
191,611 + Atu6176 0.43 +0.4
191,617 - Atu6176 0.44 +0.3
191,625 + Atu6176 0.45 -0.2
191,630 + Atu6176 0.45 -0.1
191,638 - Atu6176 0.46 +0.3
191,638 - Atu6176 0.46 +0.5
191,643 + Atu6176 0.46 +0.0
191,645 - Atu6176 0.46 +0.3
191,714 + Atu6176 0.52 -0.1
191,742 + Atu6176 0.55 +0.3
191,742 + Atu6176 0.55 +0.3
191,771 + Atu6176 0.57 +0.1
191,779 - Atu6176 0.58 -1.0
191,822 + Atu6176 0.62 -0.1
191,917 - Atu6176 0.70 +0.3
191,986 - Atu6176 0.76 +0.3
191,993 - Atu6176 0.77 +0.4
192,001 - Atu6176 0.78 +0.5
192,055 + Atu6176 0.83 -0.2
192,063 - Atu6176 0.83 +0.4
192,063 - Atu6176 0.83 +0.1
192,063 - Atu6176 0.83 +0.7
192,072 + Atu6176 0.84 -0.3
192,100 + Atu6176 0.87 +0.2
192,100 + Atu6176 0.87 +1.6
192,108 - Atu6176 0.87 +0.7
192,197 + -0.2
192,202 - -0.0
192,269 - +0.4
192,312 + +0.2
192,312 + +0.6
192,342 + +0.6
192,360 + +0.0
192,396 + +0.9
192,435 - Atu6177 0.14 +0.4
192,495 + Atu6177 0.20 +0.2
192,495 + Atu6177 0.20 -0.8
192,505 + Atu6177 0.20 +0.4
192,578 - Atu6177 0.28 +0.5
192,593 - Atu6177 0.29 +0.4
192,638 + Atu6177 0.33 -0.1
192,664 - Atu6177 0.36 +0.2
192,751 - Atu6177 0.44 +0.6
192,762 + Atu6177 0.45 -0.3
192,785 + Atu6177 0.48 -0.3
192,800 + Atu6177 0.49 -0.4
192,833 + Atu6177 0.52 +0.0
192,834 - Atu6177 0.52 -0.4
192,838 + Atu6177 0.53 -0.2
192,841 - Atu6177 0.53 +0.8
192,841 - Atu6177 0.53 +0.4
192,841 - Atu6177 0.53 +0.5
192,915 + Atu6177 0.60 +1.4
192,915 + Atu6177 0.60 +0.1
192,923 - Atu6177 0.61 +0.6
192,925 + Atu6177 0.61 +0.5
192,945 - Atu6177 0.63 +0.2
192,947 + Atu6177 0.63 +0.6
192,981 + Atu6177 0.66 +0.2
192,982 + Atu6177 0.67 +0.1
192,989 - Atu6177 0.67 +0.5
192,989 - Atu6177 0.67 +0.3
192,989 - Atu6177 0.67 +0.9
192,989 - Atu6177 0.67 +0.2
192,994 + Atu6177 0.68 +0.3
193,003 + Atu6177 0.69 +1.0
193,005 + Atu6177 0.69 +0.7
193,005 + Atu6177 0.69 -0.3
193,013 - Atu6177 0.70 +0.8
193,015 + Atu6177 0.70 +0.6
193,056 + Atu6177 0.74 +0.3
193,105 - Atu6177 0.78 +0.7
193,175 - Atu6177 0.85 +0.5
193,216 + Atu6177 0.89 +0.1
193,216 - Atu6177 0.89 +0.5
193,245 + -0.4
193,291 - +0.4
193,423 - +0.5
193,423 - -0.2
193,456 - +0.6
193,478 - +0.2
193,492 + +0.8
193,537 - -1.0
193,574 - +0.4
193,655 + Atu6178 0.14 +0.3
193,663 - Atu6178 0.15 -0.0
193,663 - Atu6178 0.15 -0.1
193,663 - Atu6178 0.15 +0.1
193,696 + Atu6178 0.20 -0.4
193,696 + Atu6178 0.20 +0.4
193,707 - Atu6178 0.21 +0.1
193,714 - Atu6178 0.22 +1.1
193,714 - Atu6178 0.22 +0.3
193,714 - Atu6178 0.22 +0.5
193,895 - Atu6178 0.46 +0.4
193,917 + Atu6178 0.49 +0.0
193,941 + Atu6178 0.52 -0.1
193,941 + Atu6178 0.52 +0.1
193,941 + Atu6178 0.52 +0.3
193,941 + Atu6178 0.52 +0.1
193,949 - Atu6178 0.53 +0.2
193,949 - Atu6178 0.53 -0.1
193,949 - Atu6178 0.53 +0.3
193,987 + Atu6178 0.58 +0.4
194,031 + Atu6178 0.64 +0.6
194,040 + Atu6178 0.65 -0.1
194,041 - Atu6178 0.65 +0.3
194,046 + Atu6178 0.66 -0.3
194,060 + Atu6178 0.67 +0.3
194,061 + Atu6178 0.68 +0.2
194,108 + Atu6178 0.74 +0.1
194,108 + Atu6178 0.74 +0.3
194,109 - Atu6178 0.74 +0.3
194,109 - Atu6178 0.74 +0.1
194,129 + Atu6178 0.77 +0.4
194,146 + Atu6178 0.79 +0.1
194,152 + Atu6178 0.80 -0.1
194,152 + Atu6178 0.80 +0.3
194,152 + Atu6178 0.80 -0.3
194,152 - Atu6178 0.80 +0.2
194,152 - Atu6178 0.80 -0.0
194,157 - Atu6178 0.80 +0.5
194,165 + Atu6178 0.81 +0.5
194,173 - Atu6178 0.82 +0.1
194,216 - Atu6178 0.88 +0.2
194,219 + Atu6178 0.88 +0.0
194,219 + Atu6178 0.88 -0.4
194,227 - Atu6178 0.89 -0.1
194,227 - Atu6178 0.89 -0.1
194,237 - +0.3
194,246 + +0.1
194,269 + +0.5
194,302 + +0.3
194,317 + +0.1

Or see this region's nucleotide sequence