Strain Fitness in Agrobacterium fabrum C58 around Atu6164

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
178,267	+				-0.2
178,299	-				-0.0
178,314	+				-0.4
178,321	-				+0.2
178,321	-				-0.4
178,324	+				+0.0
178,324	+				+0.5
178,332	-				+0.3
178,332	-				+0.2
178,355	-				+0.5
178,371	-				+0.2
178,374	+				+0.7
178,380	+		Atu6163	0.10	+0.1
178,425	+		Atu6163	0.21	+0.1
178,431	-		Atu6163	0.22	-0.4
178,508	-		Atu6163	0.40	+0.2
178,512	+		Atu6163	0.41	+1.7
178,522	-		Atu6163	0.43	-0.1
178,586	+		Atu6163	0.58	+0.1
178,586	+		Atu6163	0.58	-0.5
178,592	+		Atu6163	0.60	+0.1
178,592	+		Atu6163	0.60	+0.4
178,594	-		Atu6163	0.60	+0.4
178,628	-		Atu6163	0.68	+0.2
178,635	+		Atu6163	0.70	+0.3
178,747	+				+0.2
178,747	+				-0.1
178,755	-				+0.3
178,755	-				+0.6
178,787	+				-0.6
178,787	+				+0.5
178,834	-				+0.5
178,837	+				+0.4
178,882	+				+0.1
178,883	-				+0.6
178,890	-				+0.2
178,890	-				-0.9
178,905	+				+0.4
178,940	-				-0.2
178,988	-				-0.6
179,041	+				-0.2
179,041	+				-1.4
179,117	-				-0.1
179,203	+				-0.1
179,203	+				+0.8
179,208	+				-0.1
179,216	-				+0.2
179,248	-				-0.4
179,300	+				+0.3
179,300	+				+0.2
179,300	+				+0.2
179,300	+				-0.1
179,308	-				-0.4
179,308	-				-0.5
179,308	-				+0.0
179,320	-				-0.8
179,339	+		Atu6164	0.11	+1.3
179,379	-		Atu6164	0.16	+0.6
179,379	-		Atu6164	0.16	+0.1
179,379	-		Atu6164	0.16	-0.2
179,412	-		Atu6164	0.20	+0.3
179,498	-		Atu6164	0.32	+0.9
179,501	+		Atu6164	0.33	+1.1
179,519	-		Atu6164	0.35	+0.6
179,520	-		Atu6164	0.35	+0.5
179,545	+		Atu6164	0.39	+0.2
179,593	-		Atu6164	0.45	+0.8
179,595	+		Atu6164	0.45	+0.1
179,598	-		Atu6164	0.46	+0.6
179,631	+		Atu6164	0.50	+0.5
179,651	-		Atu6164	0.53	+0.5
179,720	-		Atu6164	0.63	+0.5
179,722	+		Atu6164	0.63	+0.6
179,723	+		Atu6164	0.63	-0.3
179,731	-		Atu6164	0.64	+0.9
179,776	+		Atu6164	0.70	+0.9
179,791	-		Atu6164	0.72	+0.4
179,883	+		Atu6164	0.85	+0.4
179,891	-		Atu6164	0.86	+0.7
179,891	-		Atu6164	0.86	+0.2
179,891	-		Atu6164	0.86	-0.0
179,901	-		Atu6164	0.87	+0.9
179,902	-		Atu6164	0.87	+0.8
179,903	-		Atu6164	0.88	+0.6
179,969	+				+0.7
180,038	-				+0.6
180,161	+				-0.2
180,170	+				+0.2
180,205	+				-0.2
180,205	-				+0.1
180,220	-				+0.6
180,233	+				+0.2
180,254	-				-0.0
180,258	+				+0.2
180,293	+				-0.2
180,329	-		Atu6165	0.26	+0.8
180,393	+		Atu6165	0.59	+0.3
180,464	+				-0.1
180,464	+				-0.1
180,464	+				+1.5
180,488	+				-0.1
180,535	+				+0.1
180,535	+				+0.1
180,557	-				+0.1
180,567	-				-0.0
180,590	-				+0.6
180,624	+				+0.0
180,632	-				+0.4
180,638	+				+0.1
180,642	+				-0.1
180,661	+				+0.2
180,670	-				-0.4
180,675	-				-0.2
180,692	-				+1.9
180,778	+				+0.8
180,785	+				+3.2
180,786	-				+0.2
180,786	-				-0.3
180,786	-				+0.5
180,793	+				+0.8
180,793	+				+1.0
180,793	+				+1.0
180,793	+				+1.0
180,801	-				+0.7
180,801	-				+0.0
180,801	-				+1.2
180,834	+				+0.1
180,842	-				+0.7
180,850	-				+0.3
180,863	+				+0.3
180,873	+				+0.2
180,881	+				-0.2
180,889	-				+0.1
180,889	-				-0.5
180,889	-				+0.6
180,889	-				+0.1
180,891	+				+0.7
180,891	+				+0.4
180,891	+				+0.6
180,891	+				-1.8
180,891	+				+0.4
180,899	-				+0.2
180,899	-				-0.3
180,906	-				+0.0
180,943	-				+0.1
180,945	+				+0.8
180,991	+				+0.0