Strain Fitness in Agrobacterium fabrum C58 around Atu4608

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,753,118	+		Atu4607	0.12	+0.9
1,753,125	-		Atu4607	0.13	+0.6
1,753,168	-		Atu4607	0.17	+0.8
1,753,209	+		Atu4607	0.20	+0.4
1,753,217	+		Atu4607	0.21	+0.2
1,753,217	-		Atu4607	0.21	+0.8
1,753,286	+		Atu4607	0.27	+0.2
1,753,360	-		Atu4607	0.34	+0.6
1,753,364	-		Atu4607	0.34	+0.3
1,753,408	-		Atu4607	0.38	+0.3
1,753,430	-		Atu4607	0.40	+1.6
1,753,519	-		Atu4607	0.48	+0.5
1,753,530	-		Atu4607	0.49	+0.4
1,753,565	-		Atu4607	0.52	+0.3
1,753,778	-		Atu4607	0.71	+1.0
1,753,799	-		Atu4607	0.73	+0.6
1,753,867	+		Atu4607	0.79	+0.4
1,753,946	+		Atu4607	0.86	+0.8
1,754,004	-				+1.3
1,754,033	-				+0.2
1,754,053	-				-1.2
1,754,163	+				+0.6
1,754,230	-				+0.6
1,754,258	+				+0.9
1,754,258	+				+0.4
1,754,258	+				+0.4
1,754,266	-				-0.4
1,754,266	-				-0.3
1,754,303	+		Atu4608	0.11	-0.1
1,754,311	-		Atu4608	0.11	+0.1
1,754,394	-		Atu4608	0.16	+0.1
1,754,466	-		Atu4608	0.20	+1.1
1,754,466	-		Atu4608	0.20	+1.0
1,754,473	+		Atu4608	0.20	+0.5
1,754,534	+		Atu4608	0.23	+0.3
1,754,679	+		Atu4608	0.31	-0.3
1,754,679	+		Atu4608	0.31	+0.5
1,754,687	-		Atu4608	0.32	+0.7
1,754,699	-		Atu4608	0.32	+0.2
1,754,709	-		Atu4608	0.33	+0.1
1,754,975	+		Atu4608	0.47	+0.7
1,754,993	-		Atu4608	0.48	+0.1
1,754,993	-		Atu4608	0.48	-0.0
1,755,015	-		Atu4608	0.49	-0.5
1,755,085	+		Atu4608	0.53	+0.6
1,755,085	+		Atu4608	0.53	+0.4
1,755,103	-		Atu4608	0.54	+0.2
1,755,112	+		Atu4608	0.55	-0.9
1,755,113	-		Atu4608	0.55	+0.4
1,755,120	-		Atu4608	0.55	+0.2
1,755,154	+		Atu4608	0.57	+0.2
1,755,157	-		Atu4608	0.57	+0.1
1,755,160	-		Atu4608	0.57	-0.1
1,755,289	+		Atu4608	0.64	+0.4
1,755,316	+		Atu4608	0.66	+0.3
1,755,318	-		Atu4608	0.66	+1.8
1,755,337	+		Atu4608	0.67	+1.4
1,755,345	-		Atu4608	0.67	+0.2
1,755,356	-		Atu4608	0.68	+0.7
1,755,394	-		Atu4608	0.70	+0.4
1,755,406	-		Atu4608	0.70	+0.9
1,755,425	-		Atu4608	0.71	+0.0
1,755,470	-		Atu4608	0.74	+1.3
1,755,493	+		Atu4608	0.75	+0.8
1,755,648	-		Atu4608	0.83	+1.0
1,755,687	-		Atu4608	0.86	-0.1
1,755,709	-		Atu4608	0.87	+0.3
1,755,768	+				+0.3
1,755,768	+				-0.6
1,755,874	+				+0.1
1,755,904	+				+0.9
1,755,946	-				+1.5
1,755,962	+				+1.6
1,756,061	-		Atu4609	0.12	+0.3
1,756,073	+		Atu4609	0.13	-0.4
1,756,126	+		Atu4609	0.19	+1.1
1,756,131	+		Atu4609	0.19	-0.2
1,756,139	-		Atu4609	0.20	+0.2
1,756,142	+		Atu4609	0.21	-0.0
1,756,142	+		Atu4609	0.21	+0.2
1,756,350	+		Atu4609	0.43	+2.4
1,756,373	-		Atu4609	0.46	+0.6
1,756,373	-		Atu4609	0.46	+0.7
1,756,373	-		Atu4609	0.46	+0.7
1,756,403	+		Atu4609	0.49	-0.2
1,756,425	+		Atu4609	0.51	-0.1
1,756,433	-		Atu4609	0.52	-0.5
1,756,433	-		Atu4609	0.52	+0.8
1,756,510	+		Atu4609	0.60	+0.2
1,756,518	-		Atu4609	0.61	+0.1
1,756,546	+		Atu4609	0.64	+0.2
1,756,565	-		Atu4609	0.66	+1.0
1,756,638	-		Atu4609	0.74	+0.3
1,756,676	-		Atu4609	0.79	-0.3
1,756,683	+		Atu4609	0.79	+0.2
1,756,723	+		Atu4609	0.84	-0.1
1,756,723	+		Atu4609	0.84	+0.4
1,756,775	+		Atu4609	0.89	+0.5
1,756,775	+		Atu4609	0.89	+0.1
1,756,775	+		Atu4609	0.89	+1.4
1,756,775	+		Atu4609	0.89	+0.2
1,756,782	-				+0.2
1,756,783	-				+0.9
1,756,783	-				+0.9
1,756,783	-				-0.2
1,756,783	-				+0.7
1,756,790	-				+0.1
1,756,824	-				+0.4
1,756,824	-				+0.4
1,756,898	+				+0.6
1,756,906	-				-1.3
1,756,906	-				-0.7
1,756,926	+				+0.2
1,756,934	-				+0.1
1,756,934	-				+0.7