Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3891 and Atu3892 are separated by 187 nucleotides Atu3892 and Atu3893 are separated by 2 nucleotides Atu3893 and Atu3894 are separated by 3 nucleotides
Atu3891: Atu3891 - hypothetical protein, at 986,083 to 987,804
Atu3891
Atu3892: Atu3892 - hypothetical protein, at 987,992 to 988,285
Atu3892
Atu3893: Atu3893 - sugarl ABC transporter permease, at 988,288 to 989,202
Atu3893
Atu3894: Atu3894 - sugar ABC transporter permease, at 989,206 to 990,072
Atu3894
Position (kb) 987
988
989 Strain fitness (log2 ratio) -1
0
1 at 987.086 kb on - strand, within Atu3891 at 987.147 kb on + strand, within Atu3891 at 987.155 kb on - strand, within Atu3891 at 987.211 kb on - strand, within Atu3891 at 987.228 kb on + strand, within Atu3891 at 987.228 kb on + strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.309 kb on - strand, within Atu3891 at 987.330 kb on + strand, within Atu3891 at 987.349 kb on - strand, within Atu3891 at 987.393 kb on + strand, within Atu3891 at 987.471 kb on - strand, within Atu3891 at 987.521 kb on - strand, within Atu3891 at 987.532 kb on - strand, within Atu3891 at 987.667 kb on - strand at 987.725 kb on + strand at 987.726 kb on - strand at 987.821 kb on - strand at 987.901 kb on - strand at 987.989 kb on + strand at 988.016 kb on + strand at 988.016 kb on + strand at 988.059 kb on - strand, within Atu3892 at 988.076 kb on + strand, within Atu3892 at 988.125 kb on - strand, within Atu3892 at 988.193 kb on - strand, within Atu3892 at 988.247 kb on + strand, within Atu3892 at 988.255 kb on - strand, within Atu3892 at 988.287 kb on + strand at 988.294 kb on - strand at 988.294 kb on - strand at 988.317 kb on - strand at 988.389 kb on + strand, within Atu3893 at 988.397 kb on - strand, within Atu3893 at 988.416 kb on + strand, within Atu3893 at 988.490 kb on + strand, within Atu3893 at 988.671 kb on + strand, within Atu3893 at 988.708 kb on - strand, within Atu3893 at 988.761 kb on + strand, within Atu3893 at 988.828 kb on + strand, within Atu3893 at 988.828 kb on + strand, within Atu3893 at 988.870 kb on + strand, within Atu3893 at 988.904 kb on + strand, within Atu3893 at 988.924 kb on + strand, within Atu3893 at 988.950 kb on - strand, within Atu3893 at 988.950 kb on - strand, within Atu3893 at 988.973 kb on + strand, within Atu3893 at 989.050 kb on + strand, within Atu3893 at 989.051 kb on + strand, within Atu3893 at 989.105 kb on + strand, within Atu3893 at 989.114 kb on + strand at 989.123 kb on + strand at 989.124 kb on + strand at 989.125 kb on + strand at 989.130 kb on + strand at 989.187 kb on + strand at 989.195 kb on - strand at 989.195 kb on - strand at 989.202 kb on + strand at 989.232 kb on + strand at 989.235 kb on - strand at 989.237 kb on + strand at 989.237 kb on + strand at 989.240 kb on - strand at 989.245 kb on - strand at 989.246 kb on + strand at 989.247 kb on + strand at 989.247 kb on - strand at 989.252 kb on + strand at 989.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 987,086 - Atu3891 0.58 +1.0 987,147 + Atu3891 0.62 -0.7 987,155 - Atu3891 0.62 +0.5 987,211 - Atu3891 0.66 -0.1 987,228 + Atu3891 0.66 -0.6 987,228 + Atu3891 0.66 -0.3 987,250 - Atu3891 0.68 -1.1 987,250 - Atu3891 0.68 -1.0 987,250 - Atu3891 0.68 +0.4 987,250 - Atu3891 0.68 -0.4 987,250 - Atu3891 0.68 -0.5 987,309 - Atu3891 0.71 +0.4 987,330 + Atu3891 0.72 +0.0 987,349 - Atu3891 0.74 +0.5 987,393 + Atu3891 0.76 +0.1 987,471 - Atu3891 0.81 +1.6 987,521 - Atu3891 0.84 +1.0 987,532 - Atu3891 0.84 +0.3 987,667 - -1.2 987,725 + -0.2 987,726 - -0.3 987,821 - -0.1 987,901 - -0.9 987,989 + -0.4 988,016 + +0.3 988,016 + +0.9 988,059 - Atu3892 0.23 +1.5 988,076 + Atu3892 0.29 -0.3 988,125 - Atu3892 0.45 -0.5 988,193 - Atu3892 0.68 +1.0 988,247 + Atu3892 0.87 +0.4 988,255 - Atu3892 0.89 +0.2 988,287 + -0.5 988,294 - -0.4 988,294 - +0.5 988,317 - -0.2 988,389 + Atu3893 0.11 -0.3 988,397 - Atu3893 0.12 +0.7 988,416 + Atu3893 0.14 +0.2 988,490 + Atu3893 0.22 -0.2 988,671 + Atu3893 0.42 +1.1 988,708 - Atu3893 0.46 -1.0 988,761 + Atu3893 0.52 +0.3 988,828 + Atu3893 0.59 +0.2 988,828 + Atu3893 0.59 +0.1 988,870 + Atu3893 0.64 -0.6 988,904 + Atu3893 0.67 -0.1 988,924 + Atu3893 0.70 +0.2 988,950 - Atu3893 0.72 -0.3 988,950 - Atu3893 0.72 +0.1 988,973 + Atu3893 0.75 -0.1 989,050 + Atu3893 0.83 +0.7 989,051 + Atu3893 0.83 +0.4 989,105 + Atu3893 0.89 +0.2 989,114 + -1.2 989,123 + -0.1 989,124 + -0.5 989,125 + +0.3 989,130 + -0.3 989,187 + -0.6 989,195 - +0.8 989,195 - -0.7 989,202 + +0.3 989,232 + +0.1 989,235 - -0.6 989,237 + +0.4 989,237 + +0.3 989,240 - -0.5 989,245 - +0.0 989,246 + -0.5 989,247 + +1.1 989,247 - -0.0 989,252 + -0.1 989,252 + +0.3
Or see this region's nucleotide sequence