Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3553 and Atu3554 are separated by 143 nucleotides Atu3554 and Atu3555 are separated by 181 nucleotides
Atu3553: Atu3553 - hypothetical protein, at 603,686 to 605,014
Atu3553
Atu3554: Atu3554 - hypothetical protein, at 605,158 to 605,658
Atu3554
Atu3555: Atu3555 - hypothetical protein, at 605,840 to 606,766
Atu3555
Position (kb) 605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 604.232 kb on + strand, within Atu3553 at 604.252 kb on - strand, within Atu3553 at 604.254 kb on - strand, within Atu3553 at 604.271 kb on - strand, within Atu3553 at 604.278 kb on + strand, within Atu3553 at 604.289 kb on - strand, within Atu3553 at 604.291 kb on - strand, within Atu3553 at 604.330 kb on + strand, within Atu3553 at 604.386 kb on - strand, within Atu3553 at 604.446 kb on + strand, within Atu3553 at 604.462 kb on + strand, within Atu3553 at 604.501 kb on + strand, within Atu3553 at 604.514 kb on - strand, within Atu3553 at 604.533 kb on - strand, within Atu3553 at 604.629 kb on + strand, within Atu3553 at 604.710 kb on - strand, within Atu3553 at 604.754 kb on - strand, within Atu3553 at 604.868 kb on + strand, within Atu3553 at 604.901 kb on + strand at 604.990 kb on + strand at 604.998 kb on - strand at 605.102 kb on - strand at 605.201 kb on + strand at 605.318 kb on + strand, within Atu3554 at 605.328 kb on + strand, within Atu3554 at 605.529 kb on + strand, within Atu3554 at 605.537 kb on - strand, within Atu3554 at 605.546 kb on - strand, within Atu3554 at 605.547 kb on + strand, within Atu3554 at 605.552 kb on + strand, within Atu3554 at 605.583 kb on - strand, within Atu3554 at 605.625 kb on + strand at 605.660 kb on + strand at 605.660 kb on - strand at 605.660 kb on - strand at 605.672 kb on + strand at 605.678 kb on + strand at 605.696 kb on + strand at 605.704 kb on - strand at 605.748 kb on - strand at 605.779 kb on + strand at 605.784 kb on + strand at 605.876 kb on + strand at 605.920 kb on - strand at 605.977 kb on - strand, within Atu3555 at 605.984 kb on + strand, within Atu3555 at 606.029 kb on + strand, within Atu3555 at 606.037 kb on - strand, within Atu3555 at 606.073 kb on - strand, within Atu3555 at 606.073 kb on - strand, within Atu3555 at 606.096 kb on - strand, within Atu3555 at 606.159 kb on + strand, within Atu3555 at 606.206 kb on + strand, within Atu3555 at 606.236 kb on - strand, within Atu3555 at 606.254 kb on - strand, within Atu3555 at 606.279 kb on - strand, within Atu3555 at 606.292 kb on + strand, within Atu3555 at 606.302 kb on - strand, within Atu3555 at 606.326 kb on - strand, within Atu3555 at 606.338 kb on + strand, within Atu3555 at 606.346 kb on - strand, within Atu3555 at 606.377 kb on + strand, within Atu3555 at 606.429 kb on + strand, within Atu3555 at 606.544 kb on + strand, within Atu3555 at 606.597 kb on - strand, within Atu3555
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 604,232 + Atu3553 0.41 -0.2 604,252 - Atu3553 0.43 -0.1 604,254 - Atu3553 0.43 +0.8 604,271 - Atu3553 0.44 +0.0 604,278 + Atu3553 0.45 +0.9 604,289 - Atu3553 0.45 +0.4 604,291 - Atu3553 0.46 -0.8 604,330 + Atu3553 0.48 +0.3 604,386 - Atu3553 0.53 +0.1 604,446 + Atu3553 0.57 -0.3 604,462 + Atu3553 0.58 -0.4 604,501 + Atu3553 0.61 -0.5 604,514 - Atu3553 0.62 +0.4 604,533 - Atu3553 0.64 +1.6 604,629 + Atu3553 0.71 -0.1 604,710 - Atu3553 0.77 +0.5 604,754 - Atu3553 0.80 -0.4 604,868 + Atu3553 0.89 +1.0 604,901 + +1.0 604,990 + +0.1 604,998 - -0.1 605,102 - -1.0 605,201 + -0.8 605,318 + Atu3554 0.32 -0.3 605,328 + Atu3554 0.34 +1.4 605,529 + Atu3554 0.74 +0.1 605,537 - Atu3554 0.76 +0.5 605,546 - Atu3554 0.77 +0.5 605,547 + Atu3554 0.78 -0.1 605,552 + Atu3554 0.79 +1.0 605,583 - Atu3554 0.85 +1.8 605,625 + -0.5 605,660 + -0.3 605,660 - -0.2 605,660 - -0.2 605,672 + +0.1 605,678 + +0.1 605,696 + -0.0 605,704 - -0.7 605,748 - +0.3 605,779 + +0.1 605,784 + -0.2 605,876 + +0.1 605,920 - -0.4 605,977 - Atu3555 0.15 -0.4 605,984 + Atu3555 0.16 +0.9 606,029 + Atu3555 0.20 +0.2 606,037 - Atu3555 0.21 -0.6 606,073 - Atu3555 0.25 +0.2 606,073 - Atu3555 0.25 +0.6 606,096 - Atu3555 0.28 +0.4 606,159 + Atu3555 0.34 +0.2 606,206 + Atu3555 0.39 -0.3 606,236 - Atu3555 0.43 +1.5 606,254 - Atu3555 0.45 +0.4 606,279 - Atu3555 0.47 +0.0 606,292 + Atu3555 0.49 +0.2 606,302 - Atu3555 0.50 +0.5 606,326 - Atu3555 0.52 +0.1 606,338 + Atu3555 0.54 -0.7 606,346 - Atu3555 0.55 -1.1 606,377 + Atu3555 0.58 +0.0 606,429 + Atu3555 0.64 -1.9 606,544 + Atu3555 0.76 +0.8 606,597 - Atu3555 0.82 -0.2
Or see this region's nucleotide sequence