Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3212 and Atu3213 are separated by 9 nucleotides Atu3213 and Atu3214 overlap by 4 nucleotides Atu3214 and Atu3215 overlap by 4 nucleotides Atu3215 and Atu3216 overlap by 4 nucleotides
Atu3212: Atu3212 - oligopeptide ABC transporter substrate-binding protein, at 226,501 to 228,198
Atu3212
Atu3213: Atu3213 - oligopeptide ABC transporter permease, at 228,208 to 229,197
Atu3213
Atu3214: Atu3214 - oligopeptide ABC transporter permease, at 229,194 to 230,024
Atu3214
Atu3215: Atu3215 - oligopeptide ABC transporter ATPase, at 230,021 to 230,824
Atu3215
Atu3216: Atu3216 - oligopeptide ABC transporter ATPase, at 230,821 to 231,606
Atu3216
Position (kb) 229
230
231 Strain fitness (log2 ratio) -1
0
1
2 at 228.261 kb on - strand at 228.390 kb on + strand, within Atu3213 at 228.487 kb on + strand, within Atu3213 at 228.495 kb on + strand, within Atu3213 at 228.515 kb on - strand, within Atu3213 at 228.527 kb on - strand, within Atu3213 at 228.665 kb on + strand, within Atu3213 at 228.699 kb on - strand, within Atu3213 at 228.708 kb on + strand, within Atu3213 at 228.720 kb on - strand, within Atu3213 at 228.765 kb on + strand, within Atu3213 at 228.768 kb on - strand, within Atu3213 at 228.815 kb on + strand, within Atu3213 at 228.825 kb on + strand, within Atu3213 at 228.891 kb on + strand, within Atu3213 at 228.924 kb on + strand, within Atu3213 at 229.047 kb on + strand, within Atu3213 at 229.048 kb on + strand, within Atu3213 at 229.099 kb on - strand at 229.099 kb on - strand at 229.099 kb on - strand at 229.109 kb on - strand at 229.111 kb on + strand at 229.193 kb on - strand at 229.230 kb on - strand at 229.266 kb on - strand at 229.353 kb on + strand, within Atu3214 at 229.359 kb on - strand, within Atu3214 at 229.366 kb on + strand, within Atu3214 at 229.369 kb on - strand, within Atu3214 at 229.374 kb on - strand, within Atu3214 at 229.374 kb on - strand, within Atu3214 at 229.389 kb on - strand, within Atu3214 at 229.413 kb on + strand, within Atu3214 at 229.526 kb on - strand, within Atu3214 at 229.596 kb on - strand, within Atu3214 at 229.728 kb on - strand, within Atu3214 at 229.875 kb on - strand, within Atu3214 at 229.901 kb on + strand, within Atu3214 at 229.971 kb on - strand at 229.983 kb on + strand at 229.991 kb on - strand at 229.991 kb on - strand at 230.082 kb on + strand at 230.090 kb on - strand at 230.090 kb on - strand at 230.100 kb on - strand at 230.107 kb on - strand, within Atu3215 at 230.297 kb on - strand, within Atu3215 at 230.446 kb on + strand, within Atu3215 at 230.601 kb on - strand, within Atu3215 at 230.627 kb on - strand, within Atu3215 at 230.660 kb on - strand, within Atu3215 at 230.666 kb on - strand, within Atu3215 at 230.749 kb on + strand at 230.750 kb on + strand at 230.755 kb on - strand at 230.755 kb on - strand at 230.758 kb on - strand at 230.838 kb on - strand at 230.853 kb on + strand at 230.853 kb on + strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.991 kb on + strand, within Atu3216 at 231.012 kb on - strand, within Atu3216
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 228,261 - -0.1 228,390 + Atu3213 0.18 -0.8 228,487 + Atu3213 0.28 -0.1 228,495 + Atu3213 0.29 -0.2 228,515 - Atu3213 0.31 +0.2 228,527 - Atu3213 0.32 +0.5 228,665 + Atu3213 0.46 -0.2 228,699 - Atu3213 0.50 +0.1 228,708 + Atu3213 0.51 -0.1 228,720 - Atu3213 0.52 -0.2 228,765 + Atu3213 0.56 -1.1 228,768 - Atu3213 0.57 +0.1 228,815 + Atu3213 0.61 -1.3 228,825 + Atu3213 0.62 +0.2 228,891 + Atu3213 0.69 -0.0 228,924 + Atu3213 0.72 -0.4 229,047 + Atu3213 0.85 -1.0 229,048 + Atu3213 0.85 -0.3 229,099 - -0.3 229,099 - -0.3 229,099 - +0.8 229,109 - +0.3 229,111 + +0.7 229,193 - +0.7 229,230 - -0.9 229,266 - -0.1 229,353 + Atu3214 0.19 -0.7 229,359 - Atu3214 0.20 +0.2 229,366 + Atu3214 0.21 -0.2 229,369 - Atu3214 0.21 +0.8 229,374 - Atu3214 0.22 -0.1 229,374 - Atu3214 0.22 -0.6 229,389 - Atu3214 0.23 -0.1 229,413 + Atu3214 0.26 +0.6 229,526 - Atu3214 0.40 -0.0 229,596 - Atu3214 0.48 +0.6 229,728 - Atu3214 0.64 +1.1 229,875 - Atu3214 0.82 +0.5 229,901 + Atu3214 0.85 -0.3 229,971 - -0.6 229,983 + -0.2 229,991 - +0.1 229,991 - +0.3 230,082 + +0.1 230,090 - +0.2 230,090 - +0.0 230,100 - -0.0 230,107 - Atu3215 0.11 -0.0 230,297 - Atu3215 0.34 -0.5 230,446 + Atu3215 0.53 +0.4 230,601 - Atu3215 0.72 +2.0 230,627 - Atu3215 0.75 -0.2 230,660 - Atu3215 0.79 -0.0 230,666 - Atu3215 0.80 +1.7 230,749 + -0.1 230,750 + +0.7 230,755 - +0.2 230,755 - +0.9 230,758 - -0.1 230,838 - -0.1 230,853 + -1.1 230,853 + +0.6 230,861 - -0.2 230,861 - -0.1 230,861 - +0.5 230,861 - -0.6 230,861 - -0.1 230,991 + Atu3216 0.22 -0.0 231,012 - Atu3216 0.24 +0.9
Or see this region's nucleotide sequence