Strain Fitness in Agrobacterium fabrum C58 around Atu3203

Experiment: Acetosyringone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3202 and Atu3203 are separated by 12 nucleotidesAtu3203 and Atu3204 are separated by 341 nucleotides Atu3202: Atu3202 - RND multidrug efflux transporter, at 211,435 to 214,569 Atu3202 Atu3203: Atu3203 - RND multidrug efflux membrane permease, at 214,582 to 215,796 Atu3203 Atu3204: Atu3204 - diguanylate cyclase, at 216,138 to 217,715 Atu3204 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.613 kb on - strand, within Atu3202at 213.850 kb on - strand, within Atu3202at 213.938 kb on - strand, within Atu3202at 213.945 kb on + strand, within Atu3202at 213.966 kb on + strand, within Atu3202at 214.024 kb on + strand, within Atu3202at 214.029 kb on + strand, within Atu3202at 214.044 kb on - strand, within Atu3202at 214.049 kb on - strand, within Atu3202at 214.094 kb on - strand, within Atu3202at 214.094 kb on - strand, within Atu3202at 214.112 kb on - strand, within Atu3202at 214.124 kb on + strand, within Atu3202at 214.124 kb on + strand, within Atu3202at 214.134 kb on + strand, within Atu3202at 214.149 kb on - strand, within Atu3202at 214.182 kb on - strand, within Atu3202at 214.192 kb on + strand, within Atu3202at 214.203 kb on + strand, within Atu3202at 214.251 kb on - strand, within Atu3202at 214.258 kb on - strandat 214.283 kb on + strandat 214.368 kb on - strandat 214.418 kb on + strandat 214.425 kb on + strandat 214.490 kb on - strandat 214.513 kb on + strandat 214.580 kb on + strandat 214.631 kb on - strandat 214.633 kb on - strandat 214.682 kb on + strandat 214.711 kb on + strand, within Atu3203at 214.751 kb on - strand, within Atu3203at 214.798 kb on - strand, within Atu3203at 214.816 kb on + strand, within Atu3203at 214.846 kb on - strand, within Atu3203at 215.013 kb on + strand, within Atu3203at 215.043 kb on + strand, within Atu3203at 215.081 kb on + strand, within Atu3203at 215.083 kb on - strand, within Atu3203at 215.104 kb on - strand, within Atu3203at 215.142 kb on - strand, within Atu3203at 215.152 kb on - strand, within Atu3203at 215.274 kb on - strand, within Atu3203at 215.292 kb on - strand, within Atu3203at 215.303 kb on - strand, within Atu3203at 215.425 kb on + strand, within Atu3203at 215.460 kb on + strand, within Atu3203at 215.488 kb on + strand, within Atu3203at 215.681 kb on + strandat 215.689 kb on - strandat 215.700 kb on + strandat 215.732 kb on - strandat 215.735 kb on + strandat 215.753 kb on + strandat 215.756 kb on + strandat 215.766 kb on - strandat 215.911 kb on - strandat 215.918 kb on + strandat 215.918 kb on + strandat 215.918 kb on + strandat 215.938 kb on - strandat 215.938 kb on - strandat 215.966 kb on - strandat 215.995 kb on - strandat 215.999 kb on + strandat 215.999 kb on + strandat 215.999 kb on + strandat 215.999 kb on + strandat 215.999 kb on + strandat 216.007 kb on - strandat 216.007 kb on - strandat 216.054 kb on + strandat 216.055 kb on + strandat 216.056 kb on + strandat 216.062 kb on - strandat 216.067 kb on + strandat 216.094 kb on + strandat 216.102 kb on - strandat 216.198 kb on + strandat 216.278 kb on - strandat 216.285 kb on - strandat 216.369 kb on - strand, within Atu3204at 216.372 kb on + strand, within Atu3204at 216.372 kb on + strand, within Atu3204at 216.372 kb on + strand, within Atu3204at 216.372 kb on + strand, within Atu3204at 216.372 kb on + strand, within Atu3204at 216.380 kb on - strand, within Atu3204at 216.486 kb on + strand, within Atu3204at 216.492 kb on - strand, within Atu3204at 216.494 kb on - strand, within Atu3204at 216.504 kb on - strand, within Atu3204at 216.562 kb on - strand, within Atu3204at 216.634 kb on - strand, within Atu3204at 216.657 kb on + strand, within Atu3204at 216.660 kb on - strand, within Atu3204at 216.713 kb on + strand, within Atu3204at 216.750 kb on + strand, within Atu3204at 216.758 kb on - strand, within Atu3204at 216.758 kb on - strand, within Atu3204

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 5 mM
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213,613 - Atu3202 0.69 -0.6
213,850 - Atu3202 0.77 -0.2
213,938 - Atu3202 0.80 +1.1
213,945 + Atu3202 0.80 -0.3
213,966 + Atu3202 0.81 +1.2
214,024 + Atu3202 0.83 +0.2
214,029 + Atu3202 0.83 -0.2
214,044 - Atu3202 0.83 -0.2
214,049 - Atu3202 0.83 -0.4
214,094 - Atu3202 0.85 -0.0
214,094 - Atu3202 0.85 +0.8
214,112 - Atu3202 0.85 +0.3
214,124 + Atu3202 0.86 -0.7
214,124 + Atu3202 0.86 -0.6
214,134 + Atu3202 0.86 +0.4
214,149 - Atu3202 0.87 +0.4
214,182 - Atu3202 0.88 -0.3
214,192 + Atu3202 0.88 +1.1
214,203 + Atu3202 0.88 -0.5
214,251 - Atu3202 0.90 +0.0
214,258 - -0.0
214,283 + -0.6
214,368 - +0.2
214,418 + -0.2
214,425 + -0.6
214,490 - -0.1
214,513 + -0.4
214,580 + -0.4
214,631 - -0.1
214,633 - +0.1
214,682 + -0.9
214,711 + Atu3203 0.11 -1.3
214,751 - Atu3203 0.14 -0.4
214,798 - Atu3203 0.18 -0.2
214,816 + Atu3203 0.19 -0.1
214,846 - Atu3203 0.22 +0.5
215,013 + Atu3203 0.35 -0.0
215,043 + Atu3203 0.38 -0.8
215,081 + Atu3203 0.41 -0.9
215,083 - Atu3203 0.41 -0.0
215,104 - Atu3203 0.43 -0.2
215,142 - Atu3203 0.46 -1.0
215,152 - Atu3203 0.47 -1.6
215,274 - Atu3203 0.57 -0.2
215,292 - Atu3203 0.58 -0.3
215,303 - Atu3203 0.59 +0.0
215,425 + Atu3203 0.69 -0.2
215,460 + Atu3203 0.72 -0.7
215,488 + Atu3203 0.75 +0.2
215,681 + -0.2
215,689 - -0.5
215,700 + -1.2
215,732 - -0.3
215,735 + +0.5
215,753 + -1.5
215,756 + -0.3
215,766 - -0.6
215,911 - -0.1
215,918 + -0.0
215,918 + -1.2
215,918 + -0.2
215,938 - +0.3
215,938 - +0.1
215,966 - -0.6
215,995 - -0.0
215,999 + -0.5
215,999 + +0.3
215,999 + -0.6
215,999 + +0.4
215,999 + -0.2
216,007 - -0.3
216,007 - -0.2
216,054 + +1.1
216,055 + +1.2
216,056 + +2.0
216,062 - +0.6
216,067 + -0.2
216,094 + -0.8
216,102 - +0.3
216,198 + -1.9
216,278 - -0.3
216,285 - +0.4
216,369 - Atu3204 0.15 +0.3
216,372 + Atu3204 0.15 -0.0
216,372 + Atu3204 0.15 -0.3
216,372 + Atu3204 0.15 +0.3
216,372 + Atu3204 0.15 -0.5
216,372 + Atu3204 0.15 +1.1
216,380 - Atu3204 0.15 -0.3
216,486 + Atu3204 0.22 +0.1
216,492 - Atu3204 0.22 +0.8
216,494 - Atu3204 0.23 -0.3
216,504 - Atu3204 0.23 -0.2
216,562 - Atu3204 0.27 +0.2
216,634 - Atu3204 0.31 -0.3
216,657 + Atu3204 0.33 +0.4
216,660 - Atu3204 0.33 -0.4
216,713 + Atu3204 0.36 -0.3
216,750 + Atu3204 0.39 +0.0
216,758 - Atu3204 0.39 -0.5
216,758 - Atu3204 0.39 -0.5

Or see this region's nucleotide sequence