Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2670 and Atu2671 overlap by 4 nucleotides Atu2671 and Atu2672 are separated by 106 nucleotides Atu2672 and Atu2673 are separated by 108 nucleotides
Atu2670: Atu2670 - ABC transporter, nucleotide binding/ATPase protein, at 2,654,447 to 2,655,241
Atu2670
Atu2671: Atu2671 - ABC transporter, membrane spanning protein, at 2,655,238 to 2,656,119
Atu2671
Atu2672: Atu2672 - hypothetical protein, at 2,656,226 to 2,657,179
Atu2672
Atu2673: Atu2673 - hypothetical protein, at 2,657,288 to 2,658,460
Atu2673
Position (kb)
2656
2657
2658 Strain fitness (log2 ratio)
-1
0
1
2 at 2655.324 kb on + strand at 2655.324 kb on + strand at 2655.332 kb on - strand, within Atu2671 at 2655.332 kb on - strand, within Atu2671 at 2655.341 kb on + strand, within Atu2671 at 2655.351 kb on + strand, within Atu2671 at 2655.351 kb on + strand, within Atu2671 at 2655.391 kb on - strand, within Atu2671 at 2655.498 kb on - strand, within Atu2671 at 2655.596 kb on + strand, within Atu2671 at 2655.668 kb on + strand, within Atu2671 at 2655.746 kb on - strand, within Atu2671 at 2655.746 kb on - strand, within Atu2671 at 2655.796 kb on - strand, within Atu2671 at 2655.815 kb on - strand, within Atu2671 at 2655.893 kb on - strand, within Atu2671 at 2656.095 kb on - strand at 2656.217 kb on + strand at 2656.342 kb on - strand, within Atu2672 at 2656.650 kb on + strand, within Atu2672 at 2656.652 kb on - strand, within Atu2672 at 2656.658 kb on - strand, within Atu2672 at 2656.694 kb on + strand, within Atu2672 at 2656.712 kb on - strand, within Atu2672 at 2656.974 kb on + strand, within Atu2672 at 2656.974 kb on + strand, within Atu2672 at 2656.982 kb on - strand, within Atu2672 at 2657.028 kb on - strand, within Atu2672 at 2657.041 kb on + strand, within Atu2672 at 2657.224 kb on + strand at 2657.227 kb on - strand at 2657.486 kb on + strand, within Atu2673 at 2657.516 kb on - strand, within Atu2673 at 2657.573 kb on - strand, within Atu2673 at 2657.714 kb on + strand, within Atu2673 at 2657.924 kb on + strand, within Atu2673 at 2657.924 kb on + strand, within Atu2673 at 2657.932 kb on + strand, within Atu2673 at 2657.932 kb on - strand, within Atu2673 at 2657.953 kb on + strand, within Atu2673 at 2657.961 kb on - strand, within Atu2673 at 2657.977 kb on + strand, within Atu2673 at 2658.009 kb on + strand, within Atu2673 at 2658.081 kb on + strand, within Atu2673 at 2658.094 kb on - strand, within Atu2673 at 2658.116 kb on + strand, within Atu2673 at 2658.166 kb on - strand, within Atu2673
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 2,655,324 + -0.1 2,655,324 + +0.7 2,655,332 - Atu2671 0.11 -0.1 2,655,332 - Atu2671 0.11 -0.1 2,655,341 + Atu2671 0.12 -0.5 2,655,351 + Atu2671 0.13 +0.9 2,655,351 + Atu2671 0.13 +0.5 2,655,391 - Atu2671 0.17 -0.4 2,655,498 - Atu2671 0.29 +1.0 2,655,596 + Atu2671 0.41 +0.2 2,655,668 + Atu2671 0.49 +0.9 2,655,746 - Atu2671 0.58 +0.0 2,655,746 - Atu2671 0.58 +0.6 2,655,796 - Atu2671 0.63 +2.2 2,655,815 - Atu2671 0.65 -0.1 2,655,893 - Atu2671 0.74 +0.0 2,656,095 - +0.2 2,656,217 + -1.2 2,656,342 - Atu2672 0.12 -0.6 2,656,650 + Atu2672 0.44 -0.5 2,656,652 - Atu2672 0.45 -0.9 2,656,658 - Atu2672 0.45 +0.9 2,656,694 + Atu2672 0.49 -0.7 2,656,712 - Atu2672 0.51 -0.5 2,656,974 + Atu2672 0.78 -0.5 2,656,974 + Atu2672 0.78 -0.1 2,656,982 - Atu2672 0.79 +0.4 2,657,028 - Atu2672 0.84 -0.6 2,657,041 + Atu2672 0.85 -0.4 2,657,224 + +0.6 2,657,227 - +0.0 2,657,486 + Atu2673 0.17 -0.1 2,657,516 - Atu2673 0.19 +0.4 2,657,573 - Atu2673 0.24 -1.1 2,657,714 + Atu2673 0.36 -0.1 2,657,924 + Atu2673 0.54 -0.3 2,657,924 + Atu2673 0.54 -0.3 2,657,932 + Atu2673 0.55 +0.6 2,657,932 - Atu2673 0.55 -0.4 2,657,953 + Atu2673 0.57 +2.2 2,657,961 - Atu2673 0.57 -1.0 2,657,977 + Atu2673 0.59 -0.2 2,658,009 + Atu2673 0.61 +1.2 2,658,081 + Atu2673 0.68 +0.2 2,658,094 - Atu2673 0.69 -0.1 2,658,116 + Atu2673 0.71 +0.2 2,658,166 - Atu2673 0.75 -0.1
Or see this region's nucleotide sequence