Strain Fitness in Agrobacterium fabrum C58 around Atu2280

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
2,251,114	+		Atu2279	0.17	+0.2
2,251,132	+		Atu2279	0.18	+0.2
2,251,166	+		Atu2279	0.22	-1.6
2,251,193	+		Atu2279	0.24	-0.0
2,251,232	-		Atu2279	0.28	+0.6
2,251,240	-		Atu2279	0.29	+0.2
2,251,256	+		Atu2279	0.30	+0.8
2,251,578	+		Atu2279	0.61	+0.4
2,251,658	+		Atu2279	0.69	+0.7
2,251,693	+		Atu2279	0.72	-0.5
2,251,709	+		Atu2279	0.73	-1.3
2,251,728	+		Atu2279	0.75	+0.9
2,251,769	+		Atu2279	0.79	+0.4
2,251,774	+		Atu2279	0.80	-0.1
2,251,777	-		Atu2279	0.80	-0.0
2,251,787	-		Atu2279	0.81	+1.0
2,251,827	-		Atu2279	0.85	+0.5
2,251,827	-		Atu2279	0.85	-0.1
2,251,873	+		Atu2279	0.89	+0.2
2,251,898	+				-0.5
2,251,982	+				+0.4
2,251,988	+				-0.4
2,252,047	+				+0.1
2,252,077	+				-0.1
2,252,110	-		Atu2280	0.12	-0.1
2,252,111	+		Atu2280	0.12	+0.2
2,252,133	-		Atu2280	0.15	+1.4
2,252,165	+		Atu2280	0.18	+0.3
2,252,185	-		Atu2280	0.20	+0.4
2,252,188	+		Atu2280	0.20	+0.5
2,252,196	-		Atu2280	0.21	-0.5
2,252,221	+		Atu2280	0.23	+0.7
2,252,222	-		Atu2280	0.23	+0.4
2,252,266	+		Atu2280	0.27	-0.1
2,252,266	+		Atu2280	0.27	+1.2
2,252,352	-		Atu2280	0.36	+1.0
2,252,363	-		Atu2280	0.37	-0.0
2,252,385	-		Atu2280	0.39	+0.5
2,252,437	-		Atu2280	0.44	+0.3
2,252,524	+		Atu2280	0.52	+0.8
2,252,542	-		Atu2280	0.54	+0.4
2,252,697	-		Atu2280	0.69	+1.6
2,252,697	-		Atu2280	0.69	+0.6
2,252,697	-		Atu2280	0.69	+0.3
2,252,702	-		Atu2280	0.70	+0.0
2,252,702	-		Atu2280	0.70	+0.4
2,252,788	-		Atu2280	0.78	+1.1
2,252,836	-		Atu2280	0.83	+0.1
2,252,912	+				+3.0
2,252,967	-				+0.3
2,253,003	+				+1.4
2,253,011	-				-0.0
2,253,011	-				-0.2
2,253,063	+				-0.6
2,253,102	-				+0.1
2,253,105	+				+0.0
2,253,113	-				+2.0
2,253,168	+				+0.2
2,253,230	-		Atu2281	0.11	+0.7
2,253,370	+		Atu2281	0.26	-0.3
2,253,370	+		Atu2281	0.26	+0.2
2,253,466	+		Atu2281	0.36	-0.0
2,253,515	-		Atu2281	0.41	-0.1
2,253,533	-		Atu2281	0.43	-0.1
2,253,545	+		Atu2281	0.44	+0.4
2,253,553	+		Atu2281	0.45	+0.2
2,253,578	+		Atu2281	0.47	+1.1
2,253,652	+		Atu2281	0.55	+0.3
2,253,748	-		Atu2281	0.65	-0.2
2,253,748	-		Atu2281	0.65	+0.3
2,253,884	-		Atu2281	0.80	+0.1