Strain Fitness in Agrobacterium fabrum C58 around Atu1708

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,691,547	-				-0.9
1,691,568	-				-0.3
1,691,584	-				-1.1
1,691,660	+				-0.3
1,691,716	-				-1.0
1,691,821	-		Atu1707	0.23	-0.4
1,691,826	+		Atu1707	0.24	-0.3
1,691,826	+		Atu1707	0.24	-2.3
1,691,952	-		Atu1707	0.43	-0.4
1,691,956	-		Atu1707	0.44	+0.3
1,691,962	+		Atu1707	0.45	-0.7
1,691,990	+		Atu1707	0.49	-0.4
1,691,990	+		Atu1707	0.49	-1.0
1,691,990	+		Atu1707	0.49	-0.2
1,692,000	+		Atu1707	0.50	+0.1
1,692,095	+		Atu1707	0.65	-0.3
1,692,103	-		Atu1707	0.66	-0.7
1,692,203	-		Atu1707	0.82	-0.3
1,692,214	-		Atu1707	0.83	+0.2
1,692,366	+				-0.4
1,692,435	+				+0.2
1,692,435	+				-0.9
1,692,560	+		Atu1708	0.19	-2.4
1,692,579	-		Atu1708	0.21	-0.4
1,692,629	-		Atu1708	0.27	-0.3
1,692,641	-		Atu1708	0.29	+0.5
1,692,649	-		Atu1708	0.30	-0.5
1,692,669	-		Atu1708	0.32	-1.6
1,692,669	-		Atu1708	0.32	-0.4
1,692,724	-		Atu1708	0.38	+1.3
1,692,862	+		Atu1708	0.55	-0.7
1,692,862	+		Atu1708	0.55	-1.1
1,692,870	-		Atu1708	0.56	-1.3
1,692,870	-		Atu1708	0.56	-0.3
1,692,979	+		Atu1708	0.69	+0.3
1,693,088	+		Atu1708	0.81	+1.2
1,693,198	-				-0.2
1,693,201	+				-0.2
1,693,214	+				+0.3
1,693,321	-				-0.4
1,693,439	+		Atu1709	0.13	-0.4
1,693,471	+		Atu1709	0.17	-0.6
1,693,476	+		Atu1709	0.17	+0.2
1,693,796	+		Atu1709	0.48	-0.7
1,693,838	-		Atu1709	0.53	-0.2
1,693,893	-		Atu1709	0.58	-0.3
1,693,921	+		Atu1709	0.61	-0.2
1,694,027	-		Atu1709	0.71	-1.8
1,694,027	-		Atu1709	0.71	-0.2
1,694,082	+		Atu1709	0.77	-0.0
1,694,130	+		Atu1709	0.81	-1.1
1,694,130	+		Atu1709	0.81	-0.2
1,694,228	+				-0.6
1,694,228	+				-0.6
1,694,236	-				+0.2