Strain Fitness in Agrobacterium fabrum C58 around Atu1427

Experiment: Acetosyringone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1426 and Atu1427 are separated by 12 nucleotidesAtu1427 and Atu1428 are separated by 121 nucleotidesAtu1428 and Atu1429 are separated by 276 nucleotides Atu1426: Atu1426 - enolase, at 1,421,590 to 1,422,864 Atu1426 Atu1427: Atu1427 - hypothetical protein, at 1,422,877 to 1,423,056 Atu1427 Atu1428: Atu1428 - hypothetical protein, at 1,423,178 to 1,423,495 Atu1428 Atu1429: Atu1429 - pyruvate dehydrogenase alpha subunit, at 1,423,772 to 1,424,692 Atu1429 Position (kb) 1422 1423 1424Strain fitness (log2 ratio) -2 -1 0 1at 1422.371 kb on + strand, within Atu1426at 1422.744 kb on + strandat 1422.921 kb on + strand, within Atu1427at 1422.921 kb on + strand, within Atu1427at 1422.947 kb on + strand, within Atu1427at 1422.947 kb on + strand, within Atu1427at 1423.037 kb on - strand, within Atu1427at 1423.051 kb on + strandat 1423.059 kb on - strandat 1423.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 5 mM
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1,422,371 + Atu1426 0.61 -1.9
1,422,744 + -0.4
1,422,921 + Atu1427 0.24 -0.3
1,422,921 + Atu1427 0.24 +1.1
1,422,947 + Atu1427 0.39 -0.1
1,422,947 + Atu1427 0.39 +0.5
1,423,037 - Atu1427 0.89 +0.6
1,423,051 + -0.3
1,423,059 - +0.1
1,423,145 + -0.3

Or see this region's nucleotide sequence