Strain Fitness in Agrobacterium fabrum C58 around Atu1240

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,229,380	+		Atu1239	0.60	+0.7
1,229,388	-		Atu1239	0.60	-0.3
1,229,451	+		Atu1239	0.63	-0.1
1,229,454	-		Atu1239	0.63	-0.1
1,229,509	-		Atu1239	0.65	+0.2
1,229,545	-		Atu1239	0.67	+0.3
1,229,567	-		Atu1239	0.68	-0.8
1,229,568	+		Atu1239	0.68	-0.3
1,229,585	+		Atu1239	0.69	-0.0
1,229,585	+		Atu1239	0.69	+0.2
1,229,585	+		Atu1239	0.69	+0.1
1,229,670	+		Atu1239	0.72	-0.3
1,229,691	-		Atu1239	0.73	+0.0
1,229,712	-		Atu1239	0.74	+0.2
1,229,738	+		Atu1239	0.75	+0.9
1,229,834	+		Atu1239	0.80	+0.4
1,229,902	-		Atu1239	0.83	+0.7
1,229,933	+		Atu1239	0.84	-0.2
1,229,978	+		Atu1239	0.86	-0.7
1,229,987	-		Atu1239	0.86	-0.3
1,229,999	-		Atu1239	0.87	-0.7
1,230,023	+		Atu1239	0.88	+0.7
1,230,040	+		Atu1239	0.89	-0.3
1,230,109	+				+1.2
1,230,238	-				+1.8
1,230,240	-				-1.0
1,230,240	-				+0.5
1,230,342	-				-0.7
1,230,366	-				+0.2
1,230,439	+		Atu1240	0.10	+0.6
1,230,447	-		Atu1240	0.11	+0.4
1,230,464	+		Atu1240	0.12	+0.2
1,230,472	-		Atu1240	0.13	+0.4
1,230,515	+		Atu1240	0.17	+0.0
1,230,806	+		Atu1240	0.40	+0.1
1,230,911	-		Atu1240	0.49	-0.2
1,230,967	+		Atu1240	0.53	+0.3
1,230,967	+		Atu1240	0.53	-0.3
1,230,997	+		Atu1240	0.56	+0.2
1,231,005	-		Atu1240	0.56	+0.6
1,231,088	-		Atu1240	0.63	+0.1
1,231,092	+		Atu1240	0.63	-0.0
1,231,092	+		Atu1240	0.63	+0.6
1,231,100	-		Atu1240	0.64	+0.2
1,231,183	+		Atu1240	0.71	+0.5
1,231,319	+		Atu1240	0.82	+1.0
1,231,328	-		Atu1240	0.83	+0.3
1,231,417	-		Atu1240	0.90	+0.2
1,231,511	+				-0.4
1,231,549	+				-0.5
1,231,555	-				+0.1
1,231,702	-		Atu1241	0.30	-0.2
1,231,704	-		Atu1241	0.31	+0.5
1,231,787	+		Atu1241	0.69	-1.2
1,231,840	-				+2.4
1,231,840	-				+0.3
1,231,883	+				-1.7
1,231,911	+				+0.0
1,231,919	-				+0.1
1,231,959	+				-0.8
1,231,959	+				+0.1
1,231,964	+				-0.1
1,231,967	-				-0.1
1,231,967	-				+0.5
1,232,104	+		Atu1242	0.11	-1.3
1,232,104	+		Atu1242	0.11	-0.5
1,232,104	+		Atu1242	0.11	-0.6
1,232,104	+		Atu1242	0.11	+0.3
1,232,104	+		Atu1242	0.11	-0.9
1,232,112	-		Atu1242	0.12	-0.8
1,232,112	-		Atu1242	0.12	-1.5
1,232,112	-		Atu1242	0.12	+0.7
1,232,112	-		Atu1242	0.12	-0.8
1,232,112	-		Atu1242	0.12	-0.0
1,232,278	-		Atu1242	0.27	-0.4
1,232,295	-		Atu1242	0.28	-1.3
1,232,370	+		Atu1242	0.35	-1.3