Strain Fitness in Agrobacterium fabrum C58 around Atu1086

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,076,193	-				-0.8
1,076,264	-				-0.4
1,076,333	+				+0.8
1,076,392	-				+0.6
1,076,516	+				+0.8
1,076,535	+		Atu1085	0.11	-1.0
1,076,617	+		Atu1085	0.29	-0.8
1,076,699	-		Atu1085	0.47	-0.4
1,076,730	+		Atu1085	0.54	-0.3
1,076,780	+		Atu1085	0.65	+0.5
1,076,788	-		Atu1085	0.67	-0.6
1,076,788	-		Atu1085	0.67	-0.6
1,076,826	-		Atu1085	0.75	+0.1
1,077,036	+				-0.6
1,077,055	+				-0.6
1,077,110	+				-0.0
1,077,165	+				-0.6
1,077,204	-				-0.4
1,077,212	-				-0.9
1,077,332	-		Atu1086	0.17	-0.4
1,077,334	-		Atu1086	0.17	-0.3
1,077,530	-		Atu1086	0.29	-1.4
1,077,559	+		Atu1086	0.30	-0.4
1,077,567	-		Atu1086	0.31	-0.2
1,077,664	-		Atu1086	0.37	-0.7
1,077,700	+		Atu1086	0.39	-0.1
1,077,708	-		Atu1086	0.40	-1.9
1,077,715	-		Atu1086	0.40	-1.0
1,077,753	-		Atu1086	0.42	+1.8
1,077,765	+		Atu1086	0.43	+0.2
1,077,765	-		Atu1086	0.43	+0.0
1,077,791	+		Atu1086	0.45	-0.4
1,077,892	-		Atu1086	0.51	-0.1
1,078,015	-		Atu1086	0.59	-1.4
1,078,024	-		Atu1086	0.59	-0.5
1,078,174	-		Atu1086	0.68	-0.9
1,078,213	+		Atu1086	0.71	-1.3
1,078,213	+		Atu1086	0.71	-0.5
1,078,237	+		Atu1086	0.72	-0.4
1,078,244	+		Atu1086	0.73	-0.9
1,078,245	-		Atu1086	0.73	+0.1
1,078,347	+		Atu1086	0.79	-0.5
1,078,360	-		Atu1086	0.80	-0.4
1,078,361	-		Atu1086	0.80	-0.7
1,078,363	-		Atu1086	0.80	-0.7
1,078,451	-		Atu1086	0.85	-0.4
1,078,485	+		Atu1086	0.88	+0.5
1,078,497	+		Atu1086	0.88	-0.2
1,078,543	-				-0.5
1,078,543	-				-0.7
1,078,571	+				-1.0
1,078,577	-				-0.2
1,078,618	+				-0.5
1,078,626	-				+0.2
1,078,628	+				+0.2
1,078,680	-				-0.6
1,078,764	+				-0.4
1,078,772	-				-0.6
1,078,845	+		Atu1087	0.13	-0.9
1,078,845	+		Atu1087	0.13	-1.0
1,078,845	+		Atu1087	0.13	-0.5
1,078,944	-		Atu1087	0.22	-0.8
1,079,013	-		Atu1087	0.29	-0.5
1,079,080	-		Atu1087	0.35	-0.1
1,079,080	-		Atu1087	0.35	-0.3
1,079,083	-		Atu1087	0.35	-0.2
1,079,092	-		Atu1087	0.36	-0.0
1,079,100	+		Atu1087	0.37	-0.9
1,079,115	+		Atu1087	0.38	+0.5
1,079,118	-		Atu1087	0.39	-0.0
1,079,136	-		Atu1087	0.40	-0.7
1,079,140	-		Atu1087	0.41	-0.7
1,079,448	+		Atu1087	0.69	-1.0
1,079,546	-		Atu1087	0.79	-0.5
1,079,553	+		Atu1087	0.79	+0.3
1,079,553	+		Atu1087	0.79	+0.4
1,079,566	+		Atu1087	0.81	+0.0
1,079,644	+		Atu1087	0.88	+0.5