Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0775 and Atu0776 overlap by 4 nucleotides Atu0776 and Atu0777 are separated by 176 nucleotides Atu0777 and Atu0778 are separated by 14 nucleotides
Atu0775: Atu0775 - homoserine kinase, at 770,874 to 771,842
Atu0775
Atu0776: Atu0776 - ribonuclease H, at 771,839 to 772,279
Atu0776
Atu0777: Atu0777 - hypothetical protein, at 772,456 to 772,764
Atu0777
Atu0778: Atu0778 - hypothetical protein, at 772,779 to 775,319
Atu0778
Position (kb) 772
773 Strain fitness (log2 ratio) -1
0
1
2 at 772.254 kb on + strand at 772.262 kb on - strand at 772.292 kb on - strand at 772.309 kb on - strand at 772.318 kb on - strand at 772.482 kb on - strand at 772.595 kb on - strand, within Atu0777 at 772.814 kb on + strand at 772.912 kb on - strand at 772.935 kb on + strand at 773.052 kb on + strand, within Atu0778 at 773.052 kb on + strand, within Atu0778 at 773.060 kb on - strand, within Atu0778 at 773.093 kb on + strand, within Atu0778 at 773.180 kb on - strand, within Atu0778 at 773.204 kb on + strand, within Atu0778 at 773.204 kb on + strand, within Atu0778 at 773.240 kb on + strand, within Atu0778 at 773.370 kb on + strand, within Atu0778 at 773.429 kb on - strand, within Atu0778 at 773.458 kb on - strand, within Atu0778 at 773.489 kb on - strand, within Atu0778
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 772,254 + +1.5 772,262 - +0.5 772,292 - +0.3 772,309 - +0.6 772,318 - -0.1 772,482 - -0.0 772,595 - Atu0777 0.45 -1.2 772,814 + -0.2 772,912 - -0.2 772,935 + -0.5 773,052 + Atu0778 0.11 +1.9 773,052 + Atu0778 0.11 -0.3 773,060 - Atu0778 0.11 -0.2 773,093 + Atu0778 0.12 -0.3 773,180 - Atu0778 0.16 +0.0 773,204 + Atu0778 0.17 -0.5 773,204 + Atu0778 0.17 -1.2 773,240 + Atu0778 0.18 -0.7 773,370 + Atu0778 0.23 -0.1 773,429 - Atu0778 0.26 -0.1 773,458 - Atu0778 0.27 -0.2 773,489 - Atu0778 0.28 +0.3
Or see this region's nucleotide sequence