Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0716 and Atu0717 are separated by 1 nucleotides Atu0717 and Atu0718 are separated by 281 nucleotides Atu0718 and Atu0719 are separated by 159 nucleotides Atu0719 and Atu0720 are separated by 64 nucleotides
Atu0716: Atu0716 - ATP synthase B, at 717,013 to 717,654
Atu0716
Atu0717: Atu0717 - ATP synthase B chain, at 717,656 to 718,141
Atu0717
Atu0718: Atu0718 - hypothetical protein, at 718,423 to 718,884
Atu0718
Atu0719: Atu0719 - transacetylase, at 719,044 to 719,679
Atu0719
Atu0720: Atu0720 - ribonuclease HII, at 719,744 to 720,397
Atu0720
Position (kb) 718
719 Strain fitness (log2 ratio) -1
0
1 at 718.351 kb on - strand at 718.411 kb on + strand at 718.512 kb on - strand, within Atu0718 at 718.516 kb on - strand, within Atu0718 at 718.652 kb on - strand, within Atu0718 at 718.799 kb on - strand, within Atu0718 at 718.877 kb on - strand at 718.960 kb on - strand at 718.995 kb on + strand at 719.136 kb on - strand, within Atu0719 at 719.196 kb on - strand, within Atu0719 at 719.208 kb on - strand, within Atu0719 at 719.221 kb on - strand, within Atu0719 at 719.248 kb on - strand, within Atu0719 at 719.460 kb on + strand, within Atu0719 at 719.487 kb on - strand, within Atu0719 at 719.500 kb on + strand, within Atu0719 at 719.508 kb on - strand, within Atu0719 at 719.518 kb on - strand, within Atu0719 at 719.556 kb on + strand, within Atu0719 at 719.606 kb on - strand, within Atu0719 at 719.728 kb on - strand at 719.784 kb on + strand at 719.854 kb on + strand, within Atu0720 at 719.854 kb on + strand, within Atu0720 at 719.861 kb on + strand, within Atu0720 at 719.862 kb on - strand, within Atu0720 at 719.869 kb on - strand, within Atu0720 at 719.869 kb on - strand, within Atu0720
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 718,351 - +0.5 718,411 + +0.6 718,512 - Atu0718 0.19 -0.1 718,516 - Atu0718 0.20 +0.8 718,652 - Atu0718 0.50 +0.4 718,799 - Atu0718 0.81 +0.1 718,877 - -0.1 718,960 - +0.7 718,995 + -0.7 719,136 - Atu0719 0.14 -0.2 719,196 - Atu0719 0.24 -0.1 719,208 - Atu0719 0.26 +0.1 719,221 - Atu0719 0.28 +0.3 719,248 - Atu0719 0.32 +0.4 719,460 + Atu0719 0.65 +0.4 719,487 - Atu0719 0.70 +0.1 719,500 + Atu0719 0.72 +0.3 719,508 - Atu0719 0.73 -0.5 719,518 - Atu0719 0.75 +0.4 719,556 + Atu0719 0.81 +1.0 719,606 - Atu0719 0.88 +0.9 719,728 - +0.2 719,784 + -0.7 719,854 + Atu0720 0.17 -0.4 719,854 + Atu0720 0.17 +0.2 719,861 + Atu0720 0.18 -0.1 719,862 - Atu0720 0.18 -0.5 719,869 - Atu0720 0.19 -0.6 719,869 - Atu0720 0.19 -0.9
Or see this region's nucleotide sequence