Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0507 and Atu0508 overlap by 4 nucleotides Atu0508 and Atu0509 overlap by 4 nucleotides Atu0509 and Atu0510 overlap by 1 nucleotides Atu0510 and Atu0511 overlap by 1 nucleotides Atu0511 and Atu8131 overlap by 1 nucleotides
Atu0507: Atu0507 - potassium efflux system protein, at 497,142 to 497,486
Atu0507
Atu0508: Atu0508 - PH Adaption potassium efflux system, at 497,483 to 497,764
Atu0508
Atu0509: Atu0509 - phaE protein, at 497,761 to 498,246
Atu0509
Atu0510: Atu0510 - pH adaption potassium efflux system protein, at 498,246 to 499,889
Atu0510
Atu0511: Atu0511 - pH adaption potassium efflux system protein, at 499,889 to 500,224
Atu0511
Atu8131: Atu8131 - pH adaption potassium efflux system protein, at 500,224 to 503,142
Atu8131
Position (kb) 498
499
500 Strain fitness (log2 ratio) -1
0
1
2 at 497.307 kb on + strand, within Atu0507 at 497.336 kb on - strand, within Atu0507 at 497.398 kb on + strand, within Atu0507 at 497.419 kb on + strand, within Atu0507 at 497.429 kb on + strand, within Atu0507 at 497.521 kb on + strand, within Atu0508 at 497.521 kb on + strand, within Atu0508 at 497.596 kb on + strand, within Atu0508 at 497.604 kb on - strand, within Atu0508 at 497.629 kb on + strand, within Atu0508 at 497.836 kb on + strand, within Atu0509 at 498.252 kb on - strand at 498.495 kb on - strand, within Atu0510 at 498.553 kb on - strand, within Atu0510 at 498.580 kb on + strand, within Atu0510 at 498.745 kb on + strand, within Atu0510 at 498.804 kb on - strand, within Atu0510 at 498.815 kb on + strand, within Atu0510 at 498.839 kb on + strand, within Atu0510 at 498.847 kb on - strand, within Atu0510 at 498.847 kb on - strand, within Atu0510 at 498.853 kb on + strand, within Atu0510 at 498.853 kb on + strand, within Atu0510 at 499.122 kb on - strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.277 kb on + strand, within Atu0510 at 499.288 kb on + strand, within Atu0510 at 499.296 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.322 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.371 kb on + strand, within Atu0510 at 499.377 kb on - strand, within Atu0510 at 499.615 kb on - strand, within Atu0510 at 499.652 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.761 kb on + strand at 499.924 kb on + strand, within Atu0511 at 499.928 kb on - strand, within Atu0511 at 499.932 kb on - strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.966 kb on - strand, within Atu0511 at 500.014 kb on + strand, within Atu0511 at 500.029 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.151 kb on - strand, within Atu0511 at 500.444 kb on - strand at 500.470 kb on - strand at 500.514 kb on + strand at 500.626 kb on + strand, within Atu8131 at 500.705 kb on + strand, within Atu8131 at 500.814 kb on - strand, within Atu8131 at 500.838 kb on - strand, within Atu8131
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 497,307 + Atu0507 0.48 +0.2 497,336 - Atu0507 0.56 -1.0 497,398 + Atu0507 0.74 +0.1 497,419 + Atu0507 0.80 -0.2 497,429 + Atu0507 0.83 -0.1 497,521 + Atu0508 0.13 +0.0 497,521 + Atu0508 0.13 +0.4 497,596 + Atu0508 0.40 +0.3 497,604 - Atu0508 0.43 +1.4 497,629 + Atu0508 0.52 -0.1 497,836 + Atu0509 0.15 -0.0 498,252 - -0.2 498,495 - Atu0510 0.15 +0.6 498,553 - Atu0510 0.19 +0.7 498,580 + Atu0510 0.20 +1.0 498,745 + Atu0510 0.30 -0.9 498,804 - Atu0510 0.34 +0.1 498,815 + Atu0510 0.35 +0.1 498,839 + Atu0510 0.36 +1.2 498,847 - Atu0510 0.37 +1.2 498,847 - Atu0510 0.37 +0.2 498,853 + Atu0510 0.37 -0.0 498,853 + Atu0510 0.37 +0.9 499,122 - Atu0510 0.53 +0.8 499,255 + Atu0510 0.61 +1.4 499,255 + Atu0510 0.61 +0.6 499,277 + Atu0510 0.63 +0.4 499,288 + Atu0510 0.63 +0.1 499,296 - Atu0510 0.64 +1.2 499,320 - Atu0510 0.65 +0.8 499,320 - Atu0510 0.65 +0.2 499,322 + Atu0510 0.65 +0.2 499,369 + Atu0510 0.68 -0.1 499,369 + Atu0510 0.68 -0.1 499,371 + Atu0510 0.68 +0.3 499,377 - Atu0510 0.69 +0.4 499,615 - Atu0510 0.83 -0.0 499,652 - Atu0510 0.86 +0.3 499,681 - Atu0510 0.87 +1.0 499,681 - Atu0510 0.87 +0.4 499,761 + +0.6 499,924 + Atu0511 0.10 +2.5 499,928 - Atu0511 0.12 -0.3 499,932 - Atu0511 0.13 +0.5 499,953 + Atu0511 0.19 +0.7 499,953 + Atu0511 0.19 -0.6 499,961 - Atu0511 0.21 +0.1 499,961 - Atu0511 0.21 +0.0 499,966 - Atu0511 0.23 +1.4 500,014 + Atu0511 0.37 +0.2 500,029 + Atu0511 0.42 +0.3 500,112 + Atu0511 0.66 +0.2 500,112 + Atu0511 0.66 +0.3 500,151 - Atu0511 0.78 +0.1 500,444 - +0.1 500,470 - +0.1 500,514 + -0.0 500,626 + Atu8131 0.14 +0.3 500,705 + Atu8131 0.16 +1.4 500,814 - Atu8131 0.20 -0.0 500,838 - Atu8131 0.21 +0.2
Or see this region's nucleotide sequence