Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0478 and Atu0479 are separated by 559 nucleotides Atu0479 and Atu0480 are separated by 27 nucleotides
Atu0478: Atu0478 - glycosyltransferase, at 465,635 to 467,182
Atu0478
Atu0479: Atu0479 - ABC transporter, substrate binding protein (amino acid), at 467,742 to 468,503
Atu0479
Atu0480: Atu0480 - polysaccharide biosynthesis protein, at 468,531 to 469,733
Atu0480
Position (kb) 467
468
469 Strain fitness (log2 ratio) -2
-1
0
1 at 466.747 kb on + strand, within Atu0478 at 466.747 kb on + strand, within Atu0478 at 466.816 kb on + strand, within Atu0478 at 466.826 kb on - strand, within Atu0478 at 466.863 kb on + strand, within Atu0478 at 466.873 kb on + strand, within Atu0478 at 466.889 kb on + strand, within Atu0478 at 466.889 kb on + strand, within Atu0478 at 466.889 kb on + strand, within Atu0478 at 466.897 kb on - strand, within Atu0478 at 466.897 kb on - strand, within Atu0478 at 466.897 kb on - strand, within Atu0478 at 467.095 kb on - strand at 467.166 kb on - strand at 467.171 kb on + strand at 467.233 kb on - strand at 467.375 kb on - strand at 467.420 kb on - strand at 467.439 kb on + strand at 467.449 kb on + strand at 467.482 kb on - strand at 467.779 kb on - strand at 467.881 kb on - strand, within Atu0479 at 467.934 kb on + strand, within Atu0479 at 467.940 kb on + strand, within Atu0479 at 468.016 kb on + strand, within Atu0479 at 468.018 kb on + strand, within Atu0479 at 468.026 kb on + strand, within Atu0479 at 468.063 kb on - strand, within Atu0479 at 468.202 kb on - strand, within Atu0479 at 468.209 kb on - strand, within Atu0479 at 468.225 kb on - strand, within Atu0479 at 468.261 kb on - strand, within Atu0479 at 468.338 kb on - strand, within Atu0479 at 468.350 kb on - strand, within Atu0479 at 468.532 kb on + strand at 468.727 kb on - strand, within Atu0480 at 468.813 kb on - strand, within Atu0480 at 468.829 kb on + strand, within Atu0480 at 468.907 kb on - strand, within Atu0480 at 468.914 kb on + strand, within Atu0480 at 468.935 kb on - strand, within Atu0480 at 469.034 kb on - strand, within Atu0480 at 469.063 kb on - strand, within Atu0480 at 469.108 kb on + strand, within Atu0480 at 469.108 kb on + strand, within Atu0480 at 469.108 kb on + strand, within Atu0480 at 469.116 kb on - strand, within Atu0480 at 469.239 kb on + strand, within Atu0480 at 469.249 kb on + strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.262 kb on - strand, within Atu0480 at 469.393 kb on + strand, within Atu0480 at 469.401 kb on - strand, within Atu0480 at 469.421 kb on + strand, within Atu0480
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 466,747 + Atu0478 0.72 -0.5 466,747 + Atu0478 0.72 +0.0 466,816 + Atu0478 0.76 -0.0 466,826 - Atu0478 0.77 -0.6 466,863 + Atu0478 0.79 -0.3 466,873 + Atu0478 0.80 -0.5 466,889 + Atu0478 0.81 -0.7 466,889 + Atu0478 0.81 -0.3 466,889 + Atu0478 0.81 -0.1 466,897 - Atu0478 0.82 +0.3 466,897 - Atu0478 0.82 -0.8 466,897 - Atu0478 0.82 -0.1 467,095 - -1.0 467,166 - -0.3 467,171 + -0.3 467,233 - +0.7 467,375 - +0.0 467,420 - -0.2 467,439 + +0.3 467,449 + +0.4 467,482 - -0.5 467,779 - -1.2 467,881 - Atu0479 0.18 -0.5 467,934 + Atu0479 0.25 -0.6 467,940 + Atu0479 0.26 -0.4 468,016 + Atu0479 0.36 -0.8 468,018 + Atu0479 0.36 -0.2 468,026 + Atu0479 0.37 +1.0 468,063 - Atu0479 0.42 -0.9 468,202 - Atu0479 0.60 -0.6 468,209 - Atu0479 0.61 -0.2 468,225 - Atu0479 0.63 +0.0 468,261 - Atu0479 0.68 -1.9 468,338 - Atu0479 0.78 -0.6 468,350 - Atu0479 0.80 -0.7 468,532 + +0.0 468,727 - Atu0480 0.16 -1.4 468,813 - Atu0480 0.23 +0.2 468,829 + Atu0480 0.25 +0.1 468,907 - Atu0480 0.31 +1.1 468,914 + Atu0480 0.32 -0.3 468,935 - Atu0480 0.34 +0.5 469,034 - Atu0480 0.42 -0.0 469,063 - Atu0480 0.44 +0.1 469,108 + Atu0480 0.48 -1.6 469,108 + Atu0480 0.48 +0.2 469,108 + Atu0480 0.48 -0.1 469,116 - Atu0480 0.49 -0.1 469,239 + Atu0480 0.59 +0.0 469,249 + Atu0480 0.60 -0.6 469,257 - Atu0480 0.60 -0.0 469,257 - Atu0480 0.60 -0.4 469,257 - Atu0480 0.60 +0.6 469,262 - Atu0480 0.61 -0.5 469,393 + Atu0480 0.72 +0.3 469,401 - Atu0480 0.72 -0.4 469,421 + Atu0480 0.74 +0.0
Or see this region's nucleotide sequence