Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0458 and Atu8128 are separated by 33 nucleotides Atu8128 and Atu0460 are separated by 4 nucleotides Atu0460 and Atu0461 are separated by 2 nucleotides Atu0461 and Atu0462 are separated by 43 nucleotides Atu0462 and Atu0463 overlap by 25 nucleotides
Atu0458: Atu0458 - hypothetical protein, at 454,247 to 454,615
Atu0458
Atu8128: Atu8128 - putative bacteriophage P2 tail protein, at 454,649 to 455,113
Atu8128
Atu0460: Atu0460 - hypothetical protein, at 455,118 to 455,330
Atu0460
Atu0461: Atu0461 - hypothetical protein, at 455,333 to 456,493
Atu0461
Atu0462: Atu0462 - endolysin, at 456,537 to 457,178
Atu0462
Atu0463: Atu0463 - hypothetical protein, at 457,154 to 457,471
Atu0463
Position (kb) 455
456
457 Strain fitness (log2 ratio) -1
0
1
2 at 454.406 kb on - strand, within Atu0458 at 454.412 kb on - strand, within Atu0458 at 454.481 kb on - strand, within Atu0458 at 454.534 kb on - strand, within Atu0458 at 454.609 kb on + strand at 454.609 kb on + strand at 454.654 kb on - strand at 454.654 kb on - strand at 454.662 kb on + strand at 454.702 kb on - strand, within Atu8128 at 454.726 kb on - strand, within Atu8128 at 454.737 kb on + strand, within Atu8128 at 454.748 kb on + strand, within Atu8128 at 454.775 kb on - strand, within Atu8128 at 454.780 kb on + strand, within Atu8128 at 454.780 kb on + strand, within Atu8128 at 454.814 kb on + strand, within Atu8128 at 454.856 kb on - strand, within Atu8128 at 454.866 kb on - strand, within Atu8128 at 454.875 kb on - strand, within Atu8128 at 454.927 kb on + strand, within Atu8128 at 454.953 kb on - strand, within Atu8128 at 454.995 kb on + strand, within Atu8128 at 455.001 kb on - strand, within Atu8128 at 455.016 kb on + strand, within Atu8128 at 455.085 kb on + strand at 455.137 kb on - strand at 455.139 kb on + strand at 455.144 kb on + strand, within Atu0460 at 455.147 kb on - strand, within Atu0460 at 455.152 kb on + strand, within Atu0460 at 455.205 kb on + strand, within Atu0460 at 455.237 kb on + strand, within Atu0460 at 455.242 kb on + strand, within Atu0460 at 455.260 kb on + strand, within Atu0460 at 455.286 kb on + strand, within Atu0460 at 455.329 kb on + strand at 455.411 kb on - strand at 455.417 kb on + strand at 455.484 kb on - strand, within Atu0461 at 455.535 kb on + strand, within Atu0461 at 455.623 kb on - strand, within Atu0461 at 455.623 kb on - strand, within Atu0461 at 455.624 kb on - strand, within Atu0461 at 455.631 kb on + strand, within Atu0461 at 455.690 kb on - strand, within Atu0461 at 455.723 kb on - strand, within Atu0461 at 455.757 kb on - strand, within Atu0461 at 455.871 kb on + strand, within Atu0461 at 456.013 kb on + strand, within Atu0461 at 456.013 kb on + strand, within Atu0461 at 456.030 kb on - strand, within Atu0461 at 456.069 kb on - strand, within Atu0461 at 456.113 kb on + strand, within Atu0461 at 456.116 kb on - strand, within Atu0461 at 456.116 kb on - strand, within Atu0461 at 456.126 kb on - strand, within Atu0461 at 456.126 kb on - strand, within Atu0461 at 456.126 kb on - strand, within Atu0461 at 456.126 kb on - strand, within Atu0461 at 456.159 kb on + strand, within Atu0461 at 456.175 kb on - strand, within Atu0461 at 456.241 kb on + strand, within Atu0461 at 456.241 kb on + strand, within Atu0461 at 456.250 kb on + strand, within Atu0461 at 456.310 kb on - strand, within Atu0461 at 456.372 kb on + strand, within Atu0461 at 456.395 kb on - strand at 456.410 kb on + strand at 456.418 kb on - strand at 456.425 kb on + strand at 456.562 kb on + strand at 456.562 kb on + strand at 456.570 kb on - strand at 456.586 kb on + strand at 456.601 kb on + strand at 456.606 kb on + strand, within Atu0462 at 456.609 kb on - strand, within Atu0462 at 456.618 kb on + strand, within Atu0462 at 456.647 kb on + strand, within Atu0462 at 456.655 kb on - strand, within Atu0462 at 456.655 kb on - strand, within Atu0462 at 456.688 kb on - strand, within Atu0462 at 456.708 kb on + strand, within Atu0462 at 456.716 kb on - strand, within Atu0462 at 456.731 kb on - strand, within Atu0462 at 456.740 kb on + strand, within Atu0462 at 456.789 kb on + strand, within Atu0462 at 456.797 kb on - strand, within Atu0462 at 456.804 kb on + strand, within Atu0462 at 456.886 kb on + strand, within Atu0462 at 456.964 kb on - strand, within Atu0462 at 456.989 kb on + strand, within Atu0462 at 456.991 kb on - strand, within Atu0462 at 457.019 kb on + strand, within Atu0462 at 457.025 kb on - strand, within Atu0462 at 457.050 kb on - strand, within Atu0462 at 457.050 kb on - strand, within Atu0462 at 457.073 kb on - strand, within Atu0462 at 457.073 kb on - strand, within Atu0462 at 457.083 kb on - strand, within Atu0462 at 457.156 kb on + strand at 457.201 kb on + strand, within Atu0463 at 457.209 kb on - strand, within Atu0463 at 457.306 kb on + strand, within Atu0463
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 454,406 - Atu0458 0.43 +0.7 454,412 - Atu0458 0.45 +0.7 454,481 - Atu0458 0.63 +0.2 454,534 - Atu0458 0.78 -0.8 454,609 + +0.6 454,609 + +0.3 454,654 - +0.2 454,654 - +0.8 454,662 + +0.6 454,702 - Atu8128 0.11 +1.0 454,726 - Atu8128 0.17 -0.9 454,737 + Atu8128 0.19 -0.8 454,748 + Atu8128 0.21 -0.1 454,775 - Atu8128 0.27 +0.3 454,780 + Atu8128 0.28 -0.4 454,780 + Atu8128 0.28 +0.3 454,814 + Atu8128 0.35 -0.6 454,856 - Atu8128 0.45 +0.2 454,866 - Atu8128 0.47 +0.9 454,875 - Atu8128 0.49 +0.0 454,927 + Atu8128 0.60 +0.9 454,953 - Atu8128 0.65 -0.6 454,995 + Atu8128 0.74 +0.6 455,001 - Atu8128 0.76 +0.6 455,016 + Atu8128 0.79 +1.1 455,085 + +0.7 455,137 - -0.0 455,139 + -0.1 455,144 + Atu0460 0.12 +0.3 455,147 - Atu0460 0.14 -0.2 455,152 + Atu0460 0.16 -0.9 455,205 + Atu0460 0.41 +0.3 455,237 + Atu0460 0.56 +0.1 455,242 + Atu0460 0.58 -0.2 455,260 + Atu0460 0.67 +0.2 455,286 + Atu0460 0.79 +0.2 455,329 + +0.4 455,411 - +0.9 455,417 + -0.4 455,484 - Atu0461 0.13 +0.1 455,535 + Atu0461 0.17 +0.4 455,623 - Atu0461 0.25 +0.7 455,623 - Atu0461 0.25 -0.3 455,624 - Atu0461 0.25 +0.6 455,631 + Atu0461 0.26 -0.1 455,690 - Atu0461 0.31 +0.6 455,723 - Atu0461 0.34 +0.5 455,757 - Atu0461 0.37 +1.7 455,871 + Atu0461 0.46 -0.2 456,013 + Atu0461 0.59 -0.1 456,013 + Atu0461 0.59 +0.1 456,030 - Atu0461 0.60 +1.5 456,069 - Atu0461 0.63 +0.2 456,113 + Atu0461 0.67 -0.2 456,116 - Atu0461 0.67 +0.4 456,116 - Atu0461 0.67 +0.4 456,126 - Atu0461 0.68 +1.3 456,126 - Atu0461 0.68 +0.6 456,126 - Atu0461 0.68 +0.4 456,126 - Atu0461 0.68 +0.5 456,159 + Atu0461 0.71 +0.4 456,175 - Atu0461 0.73 +0.1 456,241 + Atu0461 0.78 +0.4 456,241 + Atu0461 0.78 +0.3 456,250 + Atu0461 0.79 +0.3 456,310 - Atu0461 0.84 -0.0 456,372 + Atu0461 0.89 -0.4 456,395 - +0.1 456,410 + -0.4 456,418 - +1.0 456,425 + -0.1 456,562 + +0.2 456,562 + +1.2 456,570 - +0.2 456,586 + +0.3 456,601 + +0.0 456,606 + Atu0462 0.11 +0.6 456,609 - Atu0462 0.11 +0.4 456,618 + Atu0462 0.13 +0.9 456,647 + Atu0462 0.17 +0.2 456,655 - Atu0462 0.18 +0.4 456,655 - Atu0462 0.18 +0.8 456,688 - Atu0462 0.24 +0.1 456,708 + Atu0462 0.27 +1.3 456,716 - Atu0462 0.28 +0.0 456,731 - Atu0462 0.30 +0.1 456,740 + Atu0462 0.32 -0.4 456,789 + Atu0462 0.39 +0.2 456,797 - Atu0462 0.40 +1.8 456,804 + Atu0462 0.42 -0.1 456,886 + Atu0462 0.54 +0.2 456,964 - Atu0462 0.67 +0.4 456,989 + Atu0462 0.70 +0.2 456,991 - Atu0462 0.71 +0.9 457,019 + Atu0462 0.75 -0.8 457,025 - Atu0462 0.76 +0.3 457,050 - Atu0462 0.80 +0.8 457,050 - Atu0462 0.80 +0.2 457,073 - Atu0462 0.83 +0.5 457,073 - Atu0462 0.83 -0.1 457,083 - Atu0462 0.85 +1.8 457,156 + -0.4 457,201 + Atu0463 0.15 +0.3 457,209 - Atu0463 0.17 +0.4 457,306 + Atu0463 0.48 +0.2
Or see this region's nucleotide sequence