Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0366 and Atu0367 are separated by 44 nucleotides Atu0367 and Atu0368 overlap by 1 nucleotides Atu0368 and Atu0369 are separated by 19 nucleotides Atu0369 and Atu0370 overlap by 17 nucleotides
Atu0366: Atu0366 - polypeptide deformylase, at 360,846 to 361,358
Atu0366
Atu0367: Atu0367 - methionyl-tRNA formyl transferase, at 361,403 to 362,338
Atu0367
Atu0368: Atu0368 - tRNA pseudouridine synthase I, at 362,338 to 363,138
Atu0368
Atu0369: Atu0369 - hypothetical protein, at 363,158 to 363,754
Atu0369
Atu0370: Atu0370 - succinyl-diaminopimelate desuccinylase, at 363,738 to 364,934
Atu0370
Position (kb) 362
363
364 Strain fitness (log2 ratio) -1
0
1
2 at 361.376 kb on + strand at 361.383 kb on + strand at 362.327 kb on + strand at 362.330 kb on - strand at 362.569 kb on + strand, within Atu0368 at 362.569 kb on + strand, within Atu0368 at 362.609 kb on - strand, within Atu0368 at 362.609 kb on - strand, within Atu0368 at 362.609 kb on - strand, within Atu0368 at 362.609 kb on - strand, within Atu0368 at 362.659 kb on + strand, within Atu0368 at 362.774 kb on - strand, within Atu0368 at 362.819 kb on - strand, within Atu0368 at 362.829 kb on - strand, within Atu0368 at 362.861 kb on + strand, within Atu0368 at 362.931 kb on + strand, within Atu0368 at 362.951 kb on + strand, within Atu0368 at 362.975 kb on + strand, within Atu0368 at 363.137 kb on + strand at 363.145 kb on - strand at 363.233 kb on - strand, within Atu0369 at 363.430 kb on - strand, within Atu0369 at 363.459 kb on + strand, within Atu0369 at 363.560 kb on - strand, within Atu0369 at 363.567 kb on - strand, within Atu0369 at 363.613 kb on - strand, within Atu0369 at 363.663 kb on + strand, within Atu0369 at 363.730 kb on + strand at 363.730 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 361,376 + -0.1 361,383 + +0.1 362,327 + -0.6 362,330 - -0.2 362,569 + Atu0368 0.29 +0.8 362,569 + Atu0368 0.29 +0.8 362,609 - Atu0368 0.34 +0.4 362,609 - Atu0368 0.34 +0.6 362,609 - Atu0368 0.34 +0.7 362,609 - Atu0368 0.34 -0.1 362,659 + Atu0368 0.40 +1.5 362,774 - Atu0368 0.54 +0.4 362,819 - Atu0368 0.60 +0.8 362,829 - Atu0368 0.61 +0.1 362,861 + Atu0368 0.65 +0.9 362,931 + Atu0368 0.74 +1.0 362,951 + Atu0368 0.77 +2.3 362,975 + Atu0368 0.80 +0.5 363,137 + +0.0 363,145 - -1.6 363,233 - Atu0369 0.13 -0.3 363,430 - Atu0369 0.46 -0.3 363,459 + Atu0369 0.50 -0.0 363,560 - Atu0369 0.67 -0.3 363,567 - Atu0369 0.69 -0.1 363,613 - Atu0369 0.76 +0.2 363,663 + Atu0369 0.85 -0.3 363,730 + -0.0 363,730 + +0.7
Or see this region's nucleotide sequence