Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0360 and Atu0361 are separated by 133 nucleotides Atu0361 and Atu0362 are separated by 186 nucleotides
Atu0360: Atu0360 - apolipoprotein N-acyltransferase, at 354,024 to 355,613
Atu0360
Atu0361: Atu0361 - transcriptional regulator, at 355,747 to 356,166
Atu0361
Atu0362: Atu0362 - S-adenosylmethionine synthetase, at 356,353 to 357,615
Atu0362
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 354.764 kb on - strand, within Atu0360 at 354.951 kb on + strand, within Atu0360 at 354.952 kb on + strand, within Atu0360 at 354.957 kb on + strand, within Atu0360 at 354.968 kb on - strand, within Atu0360 at 354.987 kb on - strand, within Atu0360 at 355.143 kb on + strand, within Atu0360 at 355.196 kb on - strand, within Atu0360 at 355.207 kb on - strand, within Atu0360 at 355.229 kb on - strand, within Atu0360 at 355.229 kb on - strand, within Atu0360 at 355.338 kb on - strand, within Atu0360 at 355.358 kb on + strand, within Atu0360 at 355.450 kb on + strand, within Atu0360 at 355.639 kb on + strand at 355.715 kb on + strand at 355.723 kb on - strand at 355.767 kb on + strand at 355.775 kb on - strand at 355.775 kb on - strand at 355.853 kb on - strand, within Atu0361 at 356.000 kb on + strand, within Atu0361 at 356.000 kb on + strand, within Atu0361 at 356.026 kb on - strand, within Atu0361 at 356.124 kb on - strand, within Atu0361 at 356.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 354,764 - Atu0360 0.47 -0.1 354,951 + Atu0360 0.58 +0.5 354,952 + Atu0360 0.58 +0.3 354,957 + Atu0360 0.59 +1.1 354,968 - Atu0360 0.59 -0.2 354,987 - Atu0360 0.61 -1.1 355,143 + Atu0360 0.70 -0.7 355,196 - Atu0360 0.74 +0.6 355,207 - Atu0360 0.74 +1.3 355,229 - Atu0360 0.76 -0.3 355,229 - Atu0360 0.76 -0.0 355,338 - Atu0360 0.83 -0.2 355,358 + Atu0360 0.84 -0.3 355,450 + Atu0360 0.90 -1.1 355,639 + +0.6 355,715 + +0.7 355,723 - -0.3 355,767 + +0.7 355,775 - +0.1 355,775 - -0.7 355,853 - Atu0361 0.25 +1.1 356,000 + Atu0361 0.60 -0.5 356,000 + Atu0361 0.60 -1.8 356,026 - Atu0361 0.66 +0.5 356,124 - Atu0361 0.90 +1.1 356,206 - -0.1
Or see this region's nucleotide sequence