Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0169 and Atu0170 overlap by 4 nucleotides Atu0170 and Atu0171 are separated by 283 nucleotides
Atu0169: Atu0169 - hypothetical protein, at 172,980 to 174,116
Atu0169
Atu0170: Atu0170 - hypothetical protein, at 174,113 to 174,802
Atu0170
Atu0171: Atu0171 - ABC transporter, membrane spanning protein (phosphonate), at 175,086 to 176,435
Atu0171
Position (kb) 174
175 Strain fitness (log2 ratio) -1
0
1
2 at 173.155 kb on + strand, within Atu0169 at 173.163 kb on - strand, within Atu0169 at 173.315 kb on - strand, within Atu0169 at 173.316 kb on + strand, within Atu0169 at 173.383 kb on - strand, within Atu0169 at 173.461 kb on - strand, within Atu0169 at 173.611 kb on + strand, within Atu0169 at 173.617 kb on - strand, within Atu0169 at 173.617 kb on - strand, within Atu0169 at 173.656 kb on + strand, within Atu0169 at 173.830 kb on + strand, within Atu0169 at 173.840 kb on + strand, within Atu0169 at 173.877 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.931 kb on - strand, within Atu0169 at 173.931 kb on - strand, within Atu0169 at 174.029 kb on - strand at 174.045 kb on + strand at 174.053 kb on - strand at 174.091 kb on + strand at 174.099 kb on - strand at 174.109 kb on - strand at 174.310 kb on - strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.355 kb on - strand, within Atu0170 at 174.419 kb on + strand, within Atu0170 at 174.427 kb on - strand, within Atu0170 at 174.429 kb on + strand, within Atu0170 at 174.437 kb on - strand, within Atu0170 at 174.623 kb on + strand, within Atu0170 at 174.631 kb on - strand, within Atu0170 at 174.719 kb on - strand, within Atu0170 at 174.748 kb on - strand at 174.883 kb on - strand at 174.980 kb on - strand at 174.995 kb on + strand at 174.998 kb on - strand at 175.003 kb on - strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.028 kb on - strand at 175.172 kb on - strand at 175.177 kb on - strand at 175.331 kb on - strand, within Atu0171 at 175.384 kb on + strand, within Atu0171 at 175.385 kb on - strand, within Atu0171 at 175.418 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.437 kb on - strand, within Atu0171 at 175.461 kb on + strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.634 kb on - strand, within Atu0171 at 175.644 kb on - strand, within Atu0171 at 175.689 kb on - strand, within Atu0171 at 175.772 kb on + strand, within Atu0171 at 175.777 kb on + strand, within Atu0171
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 173,155 + Atu0169 0.15 -0.9 173,163 - Atu0169 0.16 -0.0 173,315 - Atu0169 0.29 -0.2 173,316 + Atu0169 0.30 +0.2 173,383 - Atu0169 0.35 -0.3 173,461 - Atu0169 0.42 +0.1 173,611 + Atu0169 0.55 -0.3 173,617 - Atu0169 0.56 +0.1 173,617 - Atu0169 0.56 -0.3 173,656 + Atu0169 0.59 -0.5 173,830 + Atu0169 0.75 -0.2 173,840 + Atu0169 0.76 +0.2 173,877 + Atu0169 0.79 -0.0 173,923 + Atu0169 0.83 +0.6 173,923 + Atu0169 0.83 -0.1 173,923 + Atu0169 0.83 -0.0 173,923 + Atu0169 0.83 +0.1 173,931 - Atu0169 0.84 +0.5 173,931 - Atu0169 0.84 -0.3 174,029 - +1.1 174,045 + +0.9 174,053 - -1.5 174,091 + +0.7 174,099 - +0.1 174,109 - -0.3 174,310 - Atu0170 0.29 -1.3 174,347 + Atu0170 0.34 +1.0 174,347 + Atu0170 0.34 -0.2 174,347 + Atu0170 0.34 +0.2 174,355 - Atu0170 0.35 -0.5 174,419 + Atu0170 0.44 -0.0 174,427 - Atu0170 0.46 -0.4 174,429 + Atu0170 0.46 +1.6 174,437 - Atu0170 0.47 -0.1 174,623 + Atu0170 0.74 -0.0 174,631 - Atu0170 0.75 +0.4 174,719 - Atu0170 0.88 -0.2 174,748 - -0.1 174,883 - -0.4 174,980 - -0.5 174,995 + +0.4 174,998 - +0.4 175,003 - -0.3 175,010 + -0.1 175,010 + +0.8 175,028 - +0.0 175,172 - +0.3 175,177 - -0.7 175,331 - Atu0171 0.18 -1.0 175,384 + Atu0171 0.22 -0.1 175,385 - Atu0171 0.22 -0.6 175,418 + Atu0171 0.25 -0.1 175,423 + Atu0171 0.25 -0.4 175,423 + Atu0171 0.25 -0.0 175,423 + Atu0171 0.25 +0.3 175,423 + Atu0171 0.25 +0.7 175,431 - Atu0171 0.26 -1.0 175,431 - Atu0171 0.26 -0.6 175,431 - Atu0171 0.26 -0.0 175,431 - Atu0171 0.26 -0.5 175,437 - Atu0171 0.26 +0.1 175,461 + Atu0171 0.28 +1.8 175,524 - Atu0171 0.32 +1.4 175,524 - Atu0171 0.32 -0.1 175,524 - Atu0171 0.32 +0.4 175,634 - Atu0171 0.41 -0.1 175,644 - Atu0171 0.41 -0.4 175,689 - Atu0171 0.45 -0.9 175,772 + Atu0171 0.51 +0.0 175,777 + Atu0171 0.51 -0.2
Or see this region's nucleotide sequence