Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0137 and Atu0138 are separated by 115 nucleotides Atu0138 and Atu0139 are separated by 109 nucleotides Atu0139 and Atu0140 overlap by 1 nucleotides
Atu0137: Atu0137 - phosphopentomutase, at 140,293 to 141,513
Atu0137
Atu0138: Atu0138 - surfeit 1, at 141,629 to 142,459
Atu0138
Atu0139: Atu0139 - cytochrome o ubiquinol oxidase subunit IV, at 142,569 to 142,961
Atu0139
Atu0140: Atu0140 - cytochrome o ubiquinol oxidase subunit III, at 142,961 to 143,587
Atu0140
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1 at 140.661 kb on - strand, within Atu0137 at 140.749 kb on + strand, within Atu0137 at 140.749 kb on + strand, within Atu0137 at 140.821 kb on - strand, within Atu0137 at 140.888 kb on - strand, within Atu0137 at 140.921 kb on + strand, within Atu0137 at 141.030 kb on + strand, within Atu0137 at 141.116 kb on + strand, within Atu0137 at 141.124 kb on - strand, within Atu0137 at 141.370 kb on + strand, within Atu0137 at 141.385 kb on - strand, within Atu0137 at 141.443 kb on + strand at 141.574 kb on - strand at 141.726 kb on + strand, within Atu0138 at 141.734 kb on - strand, within Atu0138 at 141.736 kb on + strand, within Atu0138 at 141.795 kb on + strand, within Atu0138 at 141.916 kb on + strand, within Atu0138 at 141.970 kb on + strand, within Atu0138 at 142.003 kb on + strand, within Atu0138 at 142.044 kb on - strand, within Atu0138 at 142.106 kb on + strand, within Atu0138 at 142.106 kb on + strand, within Atu0138 at 142.119 kb on - strand, within Atu0138 at 142.124 kb on + strand, within Atu0138 at 142.183 kb on + strand, within Atu0138 at 142.245 kb on - strand, within Atu0138 at 142.255 kb on + strand, within Atu0138 at 142.255 kb on + strand, within Atu0138 at 142.263 kb on - strand, within Atu0138 at 142.263 kb on - strand, within Atu0138 at 142.290 kb on + strand, within Atu0138 at 142.500 kb on + strand at 142.567 kb on + strand at 142.575 kb on - strand at 142.586 kb on - strand at 142.586 kb on - strand at 142.588 kb on + strand at 143.083 kb on - strand, within Atu0140 at 143.093 kb on - strand, within Atu0140 at 143.227 kb on - strand, within Atu0140
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 140,661 - Atu0137 0.30 +0.4 140,749 + Atu0137 0.37 +0.3 140,749 + Atu0137 0.37 +0.2 140,821 - Atu0137 0.43 +0.1 140,888 - Atu0137 0.49 -0.2 140,921 + Atu0137 0.51 -1.2 141,030 + Atu0137 0.60 +0.6 141,116 + Atu0137 0.67 -1.2 141,124 - Atu0137 0.68 +0.0 141,370 + Atu0137 0.88 +0.0 141,385 - Atu0137 0.89 -0.3 141,443 + -0.7 141,574 - -0.5 141,726 + Atu0138 0.12 -0.5 141,734 - Atu0138 0.13 -0.6 141,736 + Atu0138 0.13 -1.3 141,795 + Atu0138 0.20 +0.1 141,916 + Atu0138 0.35 -1.6 141,970 + Atu0138 0.41 -1.8 142,003 + Atu0138 0.45 -1.4 142,044 - Atu0138 0.50 -0.6 142,106 + Atu0138 0.57 +0.0 142,106 + Atu0138 0.57 -0.4 142,119 - Atu0138 0.59 -0.1 142,124 + Atu0138 0.60 +0.6 142,183 + Atu0138 0.67 -0.4 142,245 - Atu0138 0.74 -0.4 142,255 + Atu0138 0.75 -0.7 142,255 + Atu0138 0.75 +0.8 142,263 - Atu0138 0.76 -0.5 142,263 - Atu0138 0.76 -0.5 142,290 + Atu0138 0.80 -0.4 142,500 + +0.1 142,567 + -0.4 142,575 - +0.3 142,586 - -1.9 142,586 - -0.3 142,588 + -0.4 143,083 - Atu0140 0.19 -1.6 143,093 - Atu0140 0.21 +0.3 143,227 - Atu0140 0.42 +0.7
Or see this region's nucleotide sequence