Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0104 and Atu0105 are separated by 9 nucleotides Atu0105 and Atu0106 are separated by 265 nucleotides Atu0106 and Atu0107 are separated by 29 nucleotides Atu0107 and Atu0108 are separated by 220 nucleotides
Atu0104: Atu0104 - hypothetical protein, at 108,895 to 109,353
Atu0104
Atu0105: Atu0105 - hypothetical protein, at 109,363 to 109,557
Atu0105
Atu0106: Atu0106 - cold shock protein, at 109,823 to 110,032
Atu0106
Atu0107: Atu0107 - hypothetical protein, at 110,062 to 110,223
Atu0107
Atu0108: Atu0108 - putative metalloprotease M20 family, at 110,444 to 111,835
Atu0108
Position (kb)
109
110
111 Strain fitness (log2 ratio)
-1
0
1
2 at 108.830 kb on - strand at 108.867 kb on + strand at 108.906 kb on + strand at 108.914 kb on - strand at 108.914 kb on - strand at 108.925 kb on + strand at 109.037 kb on + strand, within Atu0104 at 109.045 kb on - strand, within Atu0104 at 109.055 kb on - strand, within Atu0104 at 109.161 kb on - strand, within Atu0104 at 109.169 kb on - strand, within Atu0104 at 109.203 kb on + strand, within Atu0104 at 109.238 kb on - strand, within Atu0104 at 109.249 kb on - strand, within Atu0104 at 109.253 kb on + strand, within Atu0104 at 109.263 kb on + strand, within Atu0104 at 109.263 kb on + strand, within Atu0104 at 109.271 kb on - strand, within Atu0104 at 109.290 kb on - strand, within Atu0104 at 109.299 kb on + strand, within Atu0104 at 109.305 kb on + strand, within Atu0104 at 109.307 kb on - strand, within Atu0104 at 109.309 kb on + strand at 109.464 kb on - strand, within Atu0105 at 109.499 kb on - strand, within Atu0105 at 109.501 kb on - strand, within Atu0105 at 109.637 kb on - strand at 109.644 kb on - strand at 109.646 kb on + strand at 109.646 kb on + strand at 109.646 kb on + strand at 109.672 kb on + strand at 109.680 kb on - strand at 109.780 kb on - strand at 109.976 kb on - strand, within Atu0106 at 109.997 kb on + strand, within Atu0106 at 109.997 kb on + strand, within Atu0106 at 110.130 kb on - strand, within Atu0107 at 110.157 kb on + strand, within Atu0107 at 110.165 kb on - strand, within Atu0107 at 110.256 kb on + strand at 110.264 kb on - strand at 110.356 kb on + strand at 110.551 kb on + strand at 110.559 kb on - strand at 110.559 kb on - strand at 110.580 kb on - strand at 110.689 kb on - strand, within Atu0108 at 110.751 kb on - strand, within Atu0108 at 110.813 kb on - strand, within Atu0108 at 110.847 kb on - strand, within Atu0108 at 110.868 kb on + strand, within Atu0108 at 110.878 kb on - strand, within Atu0108 at 110.941 kb on - strand, within Atu0108
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 108,830 - -0.8 108,867 + -0.2 108,906 + +0.8 108,914 - -0.3 108,914 - -0.4 108,925 + -0.3 109,037 + Atu0104 0.31 -0.1 109,045 - Atu0104 0.33 -0.0 109,055 - Atu0104 0.35 -0.0 109,161 - Atu0104 0.58 +0.1 109,169 - Atu0104 0.60 -0.1 109,203 + Atu0104 0.67 -0.6 109,238 - Atu0104 0.75 +1.7 109,249 - Atu0104 0.77 -0.2 109,253 + Atu0104 0.78 +0.0 109,263 + Atu0104 0.80 +0.6 109,263 + Atu0104 0.80 +0.7 109,271 - Atu0104 0.82 +0.0 109,290 - Atu0104 0.86 -0.4 109,299 + Atu0104 0.88 +0.5 109,305 + Atu0104 0.89 -0.7 109,307 - Atu0104 0.90 -0.4 109,309 + +0.5 109,464 - Atu0105 0.52 +0.5 109,499 - Atu0105 0.70 +0.9 109,501 - Atu0105 0.71 +0.0 109,637 - -0.2 109,644 - -0.9 109,646 + -0.2 109,646 + +0.0 109,646 + +0.5 109,672 + -0.7 109,680 - -0.1 109,780 - +0.2 109,976 - Atu0106 0.73 +2.6 109,997 + Atu0106 0.83 -0.4 109,997 + Atu0106 0.83 -0.1 110,130 - Atu0107 0.42 -0.0 110,157 + Atu0107 0.59 +2.1 110,165 - Atu0107 0.64 +0.5 110,256 + -0.3 110,264 - +0.1 110,356 + +0.4 110,551 + -0.7 110,559 - -0.4 110,559 - -0.0 110,580 - +1.1 110,689 - Atu0108 0.18 -0.2 110,751 - Atu0108 0.22 -0.2 110,813 - Atu0108 0.27 +1.1 110,847 - Atu0108 0.29 -0.2 110,868 + Atu0108 0.30 -0.4 110,878 - Atu0108 0.31 +0.5 110,941 - Atu0108 0.36 -1.2
Or see this region's nucleotide sequence