Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0457 and Atu0458 overlap by 4 nucleotides Atu0458 and Atu8128 are separated by 33 nucleotides Atu8128 and Atu0460 are separated by 4 nucleotides Atu0460 and Atu0461 are separated by 2 nucleotides
Atu0457: Atu0457 - hypothetical protein, at 452,511 to 454,250
Atu0457
Atu0458: Atu0458 - hypothetical protein, at 454,247 to 454,615
Atu0458
Atu8128: Atu8128 - putative bacteriophage P2 tail protein, at 454,649 to 455,113
Atu8128
Atu0460: Atu0460 - hypothetical protein, at 455,118 to 455,330
Atu0460
Atu0461: Atu0461 - hypothetical protein, at 455,333 to 456,493
Atu0461
Position (kb) 454
455
456 Strain fitness (log2 ratio) -1
0
1
2 at 453.811 kb on + strand, within Atu0457 at 454.049 kb on - strand, within Atu0457 at 454.087 kb on - strand at 454.128 kb on - strand at 454.234 kb on - strand at 454.241 kb on - strand at 454.251 kb on + strand at 454.277 kb on + strand at 454.277 kb on - strand at 454.296 kb on - strand, within Atu0458 at 454.296 kb on - strand, within Atu0458 at 454.297 kb on + strand, within Atu0458 at 454.315 kb on - strand, within Atu0458 at 454.406 kb on - strand, within Atu0458 at 454.412 kb on - strand, within Atu0458 at 454.481 kb on - strand, within Atu0458 at 454.534 kb on - strand, within Atu0458 at 454.609 kb on + strand at 454.609 kb on + strand at 454.654 kb on - strand at 454.654 kb on - strand at 454.662 kb on + strand at 454.702 kb on - strand, within Atu8128 at 454.726 kb on - strand, within Atu8128 at 454.737 kb on + strand, within Atu8128 at 454.748 kb on + strand, within Atu8128 at 454.775 kb on - strand, within Atu8128 at 454.780 kb on + strand, within Atu8128 at 454.780 kb on + strand, within Atu8128 at 454.814 kb on + strand, within Atu8128 at 454.856 kb on - strand, within Atu8128 at 454.866 kb on - strand, within Atu8128 at 454.875 kb on - strand, within Atu8128 at 454.927 kb on + strand, within Atu8128 at 454.953 kb on - strand, within Atu8128 at 454.995 kb on + strand, within Atu8128 at 455.001 kb on - strand, within Atu8128 at 455.016 kb on + strand, within Atu8128 at 455.085 kb on + strand at 455.137 kb on - strand at 455.139 kb on + strand at 455.144 kb on + strand, within Atu0460 at 455.147 kb on - strand, within Atu0460 at 455.152 kb on + strand, within Atu0460 at 455.205 kb on + strand, within Atu0460 at 455.237 kb on + strand, within Atu0460 at 455.242 kb on + strand, within Atu0460 at 455.260 kb on + strand, within Atu0460 at 455.286 kb on + strand, within Atu0460 at 455.329 kb on + strand at 455.411 kb on - strand at 455.417 kb on + strand at 455.484 kb on - strand, within Atu0461 at 455.535 kb on + strand, within Atu0461 at 455.623 kb on - strand, within Atu0461 at 455.623 kb on - strand, within Atu0461 at 455.624 kb on - strand, within Atu0461 at 455.631 kb on + strand, within Atu0461 at 455.690 kb on - strand, within Atu0461 at 455.723 kb on - strand, within Atu0461 at 455.757 kb on - strand, within Atu0461 at 455.871 kb on + strand, within Atu0461 at 456.013 kb on + strand, within Atu0461 at 456.013 kb on + strand, within Atu0461 at 456.030 kb on - strand, within Atu0461 at 456.069 kb on - strand, within Atu0461 at 456.113 kb on + strand, within Atu0461
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 453,811 + Atu0457 0.75 -1.2 454,049 - Atu0457 0.88 +0.1 454,087 - +0.3 454,128 - +0.5 454,234 - -0.0 454,241 - +0.4 454,251 + +0.2 454,277 + +0.1 454,277 - +0.7 454,296 - Atu0458 0.13 +0.2 454,296 - Atu0458 0.13 +2.2 454,297 + Atu0458 0.14 +0.3 454,315 - Atu0458 0.18 +0.7 454,406 - Atu0458 0.43 +0.9 454,412 - Atu0458 0.45 +0.7 454,481 - Atu0458 0.63 +0.3 454,534 - Atu0458 0.78 +1.4 454,609 + -0.0 454,609 + +0.1 454,654 - +0.5 454,654 - +1.3 454,662 + -0.0 454,702 - Atu8128 0.11 +0.2 454,726 - Atu8128 0.17 +0.2 454,737 + Atu8128 0.19 +1.2 454,748 + Atu8128 0.21 -0.2 454,775 - Atu8128 0.27 +1.3 454,780 + Atu8128 0.28 +0.3 454,780 + Atu8128 0.28 +1.2 454,814 + Atu8128 0.35 -1.3 454,856 - Atu8128 0.45 +0.8 454,866 - Atu8128 0.47 -0.2 454,875 - Atu8128 0.49 +0.5 454,927 + Atu8128 0.60 +0.1 454,953 - Atu8128 0.65 +0.5 454,995 + Atu8128 0.74 +0.7 455,001 - Atu8128 0.76 +1.0 455,016 + Atu8128 0.79 -0.2 455,085 + +0.4 455,137 - +0.8 455,139 + +0.6 455,144 + Atu0460 0.12 +0.4 455,147 - Atu0460 0.14 +0.3 455,152 + Atu0460 0.16 +0.8 455,205 + Atu0460 0.41 +0.6 455,237 + Atu0460 0.56 +0.6 455,242 + Atu0460 0.58 +0.1 455,260 + Atu0460 0.67 +1.0 455,286 + Atu0460 0.79 +0.4 455,329 + +0.4 455,411 - +0.3 455,417 + +0.1 455,484 - Atu0461 0.13 +0.9 455,535 + Atu0461 0.17 +1.2 455,623 - Atu0461 0.25 +0.6 455,623 - Atu0461 0.25 +0.1 455,624 - Atu0461 0.25 +0.2 455,631 + Atu0461 0.26 +0.2 455,690 - Atu0461 0.31 +1.0 455,723 - Atu0461 0.34 +0.7 455,757 - Atu0461 0.37 +1.6 455,871 + Atu0461 0.46 +0.4 456,013 + Atu0461 0.59 +0.9 456,013 + Atu0461 0.59 +0.5 456,030 - Atu0461 0.60 +0.4 456,069 - Atu0461 0.63 +0.4 456,113 + Atu0461 0.67 +0.3
Or see this region's nucleotide sequence