Strain Fitness in Agrobacterium fabrum C58 around Atu8125

Experiment: Acetosyringone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0449 and Atu0450 are separated by 109 nucleotidesAtu0450 and Atu8125 are separated by 244 nucleotidesAtu8125 and Atu8083 are separated by 82 nucleotides Atu0449: Atu0449 - hypothetical protein, at 443,396 to 444,616 Atu0449 Atu0450: Atu0450 - transcription antitermination protein, at 444,726 to 445,292 Atu0450 Atu8125: Atu8125 - hypothetical protein, at 445,537 to 446,106 Atu8125 Atu8083: Atu8083 - hypothetical protein, at 446,189 to 447,001 Atu8083 Position (kb) 445 446 447Strain fitness (log2 ratio) -1 0 1at 444.649 kb on + strandat 444.656 kb on + strandat 444.770 kb on - strandat 444.776 kb on + strandat 444.922 kb on + strand, within Atu0450at 444.932 kb on + strand, within Atu0450at 444.935 kb on - strand, within Atu0450at 444.940 kb on - strand, within Atu0450at 444.940 kb on - strand, within Atu0450at 444.967 kb on + strand, within Atu0450at 444.970 kb on - strand, within Atu0450at 444.977 kb on + strand, within Atu0450at 444.993 kb on - strand, within Atu0450at 445.010 kb on + strand, within Atu0450at 445.010 kb on + strand, within Atu0450at 445.018 kb on - strand, within Atu0450at 445.092 kb on - strand, within Atu0450at 445.099 kb on - strand, within Atu0450at 445.101 kb on + strand, within Atu0450at 445.103 kb on + strand, within Atu0450at 445.111 kb on - strand, within Atu0450at 445.150 kb on - strand, within Atu0450at 445.224 kb on - strand, within Atu0450at 445.227 kb on - strand, within Atu0450at 445.265 kb on - strandat 445.267 kb on + strandat 445.275 kb on - strandat 445.292 kb on + strandat 445.300 kb on - strandat 445.300 kb on - strandat 445.305 kb on - strandat 445.443 kb on + strandat 445.481 kb on + strandat 445.508 kb on + strandat 445.571 kb on + strandat 445.624 kb on + strand, within Atu8125at 445.745 kb on + strand, within Atu8125at 445.871 kb on + strand, within Atu8125at 445.874 kb on - strand, within Atu8125at 445.879 kb on - strand, within Atu8125at 445.889 kb on + strand, within Atu8125at 445.907 kb on + strand, within Atu8125at 445.934 kb on + strand, within Atu8125at 445.939 kb on + strand, within Atu8125at 445.947 kb on - strand, within Atu8125at 445.969 kb on + strand, within Atu8125at 445.977 kb on - strand, within Atu8125at 445.979 kb on - strand, within Atu8125at 445.993 kb on - strand, within Atu8125at 446.068 kb on - strandat 446.126 kb on + strandat 446.126 kb on + strandat 446.126 kb on + strandat 446.134 kb on - strandat 446.153 kb on + strandat 446.165 kb on - strandat 446.193 kb on - strandat 446.217 kb on - strandat 446.224 kb on + strandat 446.288 kb on - strand, within Atu8083at 446.303 kb on + strand, within Atu8083at 446.309 kb on + strand, within Atu8083at 446.333 kb on - strand, within Atu8083at 446.353 kb on + strand, within Atu8083at 446.466 kb on - strand, within Atu8083at 446.509 kb on - strand, within Atu8083at 446.510 kb on + strand, within Atu8083at 446.540 kb on - strand, within Atu8083at 446.544 kb on + strand, within Atu8083at 446.550 kb on - strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.554 kb on + strand, within Atu8083at 446.589 kb on + strand, within Atu8083at 446.607 kb on - strand, within Atu8083at 446.607 kb on - strand, within Atu8083at 446.664 kb on - strand, within Atu8083at 446.685 kb on + strand, within Atu8083at 446.806 kb on + strand, within Atu8083at 446.806 kb on + strand, within Atu8083at 446.823 kb on + strand, within Atu8083at 446.849 kb on + strand, within Atu8083at 446.856 kb on + strand, within Atu8083at 446.863 kb on - strand, within Atu8083at 446.864 kb on - strand, within Atu8083at 446.869 kb on - strand, within Atu8083at 446.949 kb on + strandat 446.949 kb on + strandat 446.949 kb on + strandat 446.957 kb on - strandat 446.957 kb on - strandat 446.957 kb on - strandat 446.957 kb on - strandat 447.003 kb on - strandat 447.054 kb on - strandat 447.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 5 mM
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444,649 + -0.4
444,656 + +0.5
444,770 - -0.1
444,776 + +0.7
444,922 + Atu0450 0.35 +0.2
444,932 + Atu0450 0.36 +0.0
444,935 - Atu0450 0.37 +0.1
444,940 - Atu0450 0.38 +0.5
444,940 - Atu0450 0.38 -0.0
444,967 + Atu0450 0.43 +0.2
444,970 - Atu0450 0.43 -0.2
444,977 + Atu0450 0.44 -0.6
444,993 - Atu0450 0.47 +0.3
445,010 + Atu0450 0.50 -0.3
445,010 + Atu0450 0.50 +0.3
445,018 - Atu0450 0.51 +0.1
445,092 - Atu0450 0.65 -0.4
445,099 - Atu0450 0.66 +0.3
445,101 + Atu0450 0.66 +0.3
445,103 + Atu0450 0.66 +0.4
445,111 - Atu0450 0.68 +0.1
445,150 - Atu0450 0.75 +0.4
445,224 - Atu0450 0.88 +0.2
445,227 - Atu0450 0.88 +0.5
445,265 - +0.2
445,267 + -0.1
445,275 - +0.0
445,292 + +1.0
445,300 - +0.0
445,300 - +0.5
445,305 - -0.1
445,443 + +0.4
445,481 + -0.0
445,508 + +0.6
445,571 + -0.1
445,624 + Atu8125 0.15 +0.5
445,745 + Atu8125 0.36 +1.4
445,871 + Atu8125 0.59 +0.6
445,874 - Atu8125 0.59 +0.1
445,879 - Atu8125 0.60 +1.5
445,889 + Atu8125 0.62 -0.5
445,907 + Atu8125 0.65 +0.8
445,934 + Atu8125 0.70 +0.5
445,939 + Atu8125 0.71 +0.3
445,947 - Atu8125 0.72 +0.6
445,969 + Atu8125 0.76 +0.4
445,977 - Atu8125 0.77 +0.5
445,979 - Atu8125 0.78 +0.5
445,993 - Atu8125 0.80 +0.6
446,068 - +0.3
446,126 + +0.8
446,126 + -1.0
446,126 + +0.0
446,134 - +0.6
446,153 + -0.1
446,165 - -0.1
446,193 - +0.3
446,217 - +0.5
446,224 + -0.1
446,288 - Atu8083 0.12 +0.1
446,303 + Atu8083 0.14 +0.4
446,309 + Atu8083 0.15 -1.1
446,333 - Atu8083 0.18 +0.4
446,353 + Atu8083 0.20 +1.0
446,466 - Atu8083 0.34 +0.1
446,509 - Atu8083 0.39 +1.0
446,510 + Atu8083 0.39 +0.5
446,540 - Atu8083 0.43 +0.3
446,544 + Atu8083 0.44 +0.1
446,550 - Atu8083 0.44 +1.3
446,554 + Atu8083 0.45 +0.9
446,554 + Atu8083 0.45 +0.3
446,554 + Atu8083 0.45 +0.1
446,554 + Atu8083 0.45 +0.3
446,589 + Atu8083 0.49 -0.5
446,607 - Atu8083 0.51 +0.5
446,607 - Atu8083 0.51 +0.7
446,664 - Atu8083 0.58 +0.3
446,685 + Atu8083 0.61 +0.3
446,806 + Atu8083 0.76 -0.2
446,806 + Atu8083 0.76 +0.2
446,823 + Atu8083 0.78 +0.2
446,849 + Atu8083 0.81 +0.3
446,856 + Atu8083 0.82 +0.3
446,863 - Atu8083 0.83 +0.3
446,864 - Atu8083 0.83 +0.8
446,869 - Atu8083 0.84 +0.4
446,949 + +0.3
446,949 + -0.3
446,949 + +0.4
446,957 - +0.4
446,957 - -1.0
446,957 - +0.2
446,957 - +0.3
447,003 - +0.6
447,054 - +0.3
447,087 + +0.2

Or see this region's nucleotide sequence