Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6044 and Atu6045 are separated by 214 nucleotides Atu6045 and Atu6046 are separated by 8 nucleotides
Atu6044: Atu6044 - replication protein, at 53,578 to 54,690
Atu6044
Atu6045: Atu6045 - replication protein C, at 54,905 to 56,224
Atu6045
Atu6046: Atu6046 - DNA invertase, at 56,233 to 57,345
Atu6046
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -1
0
1 at 56.091 kb on + strand, within Atu6045 at 56.099 kb on - strand at 56.142 kb on + strand at 56.142 kb on + strand at 56.152 kb on - strand at 56.152 kb on - strand at 56.160 kb on - strand at 56.167 kb on - strand at 56.337 kb on + strand at 56.354 kb on + strand, within Atu6046 at 56.354 kb on + strand, within Atu6046 at 56.362 kb on - strand, within Atu6046 at 56.403 kb on + strand, within Atu6046 at 56.415 kb on + strand, within Atu6046 at 56.515 kb on + strand, within Atu6046 at 56.548 kb on - strand, within Atu6046 at 56.558 kb on - strand, within Atu6046 at 56.569 kb on + strand, within Atu6046 at 56.606 kb on + strand, within Atu6046 at 56.629 kb on + strand, within Atu6046 at 56.631 kb on + strand, within Atu6046 at 56.669 kb on + strand, within Atu6046 at 56.669 kb on - strand, within Atu6046 at 56.791 kb on - strand, within Atu6046 at 56.888 kb on + strand, within Atu6046 at 56.910 kb on + strand, within Atu6046 at 56.911 kb on - strand, within Atu6046 at 56.978 kb on + strand, within Atu6046 at 57.199 kb on - strand, within Atu6046
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 56,091 + Atu6045 0.90 +0.2 56,099 - +0.6 56,142 + +0.3 56,142 + -0.6 56,152 - +0.4 56,152 - +0.3 56,160 - -0.1 56,167 - +0.8 56,337 + +1.3 56,354 + Atu6046 0.11 +0.3 56,354 + Atu6046 0.11 +0.3 56,362 - Atu6046 0.12 +0.5 56,403 + Atu6046 0.15 +0.3 56,415 + Atu6046 0.16 +0.4 56,515 + Atu6046 0.25 -0.3 56,548 - Atu6046 0.28 +0.0 56,558 - Atu6046 0.29 +0.1 56,569 + Atu6046 0.30 +0.5 56,606 + Atu6046 0.34 +0.2 56,629 + Atu6046 0.36 +0.1 56,631 + Atu6046 0.36 +0.7 56,669 + Atu6046 0.39 -0.9 56,669 - Atu6046 0.39 +0.6 56,791 - Atu6046 0.50 +0.1 56,888 + Atu6046 0.59 +0.2 56,910 + Atu6046 0.61 +0.2 56,911 - Atu6046 0.61 +0.3 56,978 + Atu6046 0.67 -0.0 57,199 - Atu6046 0.87 -0.4
Or see this region's nucleotide sequence