Strain Fitness in Agrobacterium fabrum C58 around Atu4685

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,843,186	+		Atu4684	0.27	-0.6
1,843,250	+		Atu4684	0.33	+1.2
1,843,258	-		Atu4684	0.34	+0.1
1,843,258	-		Atu4684	0.34	-0.2
1,843,258	-		Atu4684	0.34	-0.3
1,843,308	+		Atu4684	0.39	-0.4
1,843,316	-		Atu4684	0.39	-0.5
1,843,335	+		Atu4684	0.41	+0.3
1,843,380	-		Atu4684	0.46	-0.5
1,843,456	+		Atu4684	0.53	+0.6
1,843,465	-		Atu4684	0.54	-0.9
1,843,470	+		Atu4684	0.54	-0.0
1,843,530	+		Atu4684	0.60	-0.2
1,843,612	+		Atu4684	0.68	-0.3
1,843,620	-		Atu4684	0.69	+0.0
1,843,625	+		Atu4684	0.69	-0.2
1,843,628	-		Atu4684	0.70	-0.3
1,843,633	-		Atu4684	0.70	-0.5
1,843,705	-		Atu4684	0.77	-0.1
1,843,774	-		Atu4684	0.84	-0.5
1,843,804	-		Atu4684	0.87	+0.3
1,843,859	-				-0.1
1,843,859	-				-0.4
1,843,869	+				-0.0
1,843,911	+				-0.2
1,843,963	+				-0.4
1,843,978	-				-0.1
1,843,990	-				+0.3
1,844,124	+				+1.5
1,844,336	+		Atu4685	0.25	+0.2
1,844,369	-		Atu4685	0.29	-0.6
1,844,407	-		Atu4685	0.33	-0.2
1,844,542	+		Atu4685	0.46	-0.3
1,844,689	-		Atu4685	0.61	-1.6
1,844,713	+		Atu4685	0.64	-0.1
1,844,713	+		Atu4685	0.64	+0.3
1,844,713	+		Atu4685	0.64	+0.5
1,844,713	+		Atu4685	0.64	+0.0
1,844,745	-		Atu4685	0.67	-0.3
1,844,826	+		Atu4685	0.75	+0.4
1,844,897	+		Atu4685	0.82	+0.8
1,844,932	+		Atu4685	0.86	-0.6
1,845,062	-				+0.3
1,845,097	-				-0.5
1,845,127	+				-0.1
1,845,139	+				-0.4
1,845,146	+				-0.2
1,845,193	+				+0.1
1,845,314	+		Atu4686	0.15	+0.8
1,845,534	+		Atu4686	0.84	-0.6
1,845,545	+		Atu4686	0.87	-0.4
1,845,858	+				+0.3
1,845,867	-				+0.6
1,845,878	+				+1.2
1,845,907	+				-0.4
1,845,933	+				-0.1
1,845,953	+				+0.0
1,845,989	-		Atu4687	0.13	-0.5
1,846,000	+		Atu4687	0.15	-0.3
1,846,062	-		Atu4687	0.23	+1.2