Strain Fitness in Agrobacterium fabrum C58 around Atu4610

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,755,946	-				+0.6
1,755,962	+				-0.8
1,756,061	-		Atu4609	0.12	+0.8
1,756,073	+		Atu4609	0.13	-0.5
1,756,126	+		Atu4609	0.19	+1.0
1,756,131	+		Atu4609	0.19	+0.0
1,756,139	-		Atu4609	0.20	+0.3
1,756,142	+		Atu4609	0.21	+1.5
1,756,142	+		Atu4609	0.21	+0.2
1,756,350	+		Atu4609	0.43	+1.3
1,756,373	-		Atu4609	0.46	+0.7
1,756,373	-		Atu4609	0.46	+0.4
1,756,373	-		Atu4609	0.46	+0.6
1,756,403	+		Atu4609	0.49	-0.5
1,756,425	+		Atu4609	0.51	+0.4
1,756,433	-		Atu4609	0.52	-1.0
1,756,433	-		Atu4609	0.52	+0.3
1,756,510	+		Atu4609	0.60	+0.1
1,756,518	-		Atu4609	0.61	+0.1
1,756,546	+		Atu4609	0.64	+0.5
1,756,565	-		Atu4609	0.66	+0.0
1,756,638	-		Atu4609	0.74	+0.3
1,756,676	-		Atu4609	0.79	+0.5
1,756,683	+		Atu4609	0.79	+0.2
1,756,723	+		Atu4609	0.84	-0.9
1,756,723	+		Atu4609	0.84	-0.1
1,756,775	+		Atu4609	0.89	+0.7
1,756,775	+		Atu4609	0.89	+0.2
1,756,775	+		Atu4609	0.89	+1.0
1,756,775	+		Atu4609	0.89	+0.7
1,756,782	-				+0.6
1,756,783	-				+0.8
1,756,783	-				+1.3
1,756,783	-				-0.4
1,756,783	-				+0.3
1,756,790	-				-0.1
1,756,824	-				+0.4
1,756,824	-				+0.4
1,756,898	+				+0.3
1,756,906	-				-1.2
1,756,906	-				-0.1
1,756,926	+				+0.3
1,756,934	-				-0.1
1,756,934	-				+0.5
1,756,966	+				-1.0
1,756,974	-				-1.0
1,757,026	-				-1.8
1,757,026	-				-0.3
1,757,099	-		Atu4610	0.16	-2.0
1,757,175	+		Atu4610	0.23	-0.7
1,757,213	-		Atu4610	0.26	-0.7
1,757,225	-		Atu4610	0.28	-1.9
1,757,240	+		Atu4610	0.29	+0.6
1,757,250	-		Atu4610	0.30	-1.7
1,757,278	-		Atu4610	0.32	-1.0
1,757,316	+		Atu4610	0.36	-2.3
1,757,380	-		Atu4610	0.42	-1.3
1,757,385	-		Atu4610	0.42	-1.3
1,757,391	+		Atu4610	0.43	-1.8
1,757,407	-		Atu4610	0.44	-0.7
1,757,435	-		Atu4610	0.47	-1.4
1,757,448	-		Atu4610	0.48	-0.9
1,757,448	-		Atu4610	0.48	-2.1
1,757,448	-		Atu4610	0.48	-0.5
1,757,448	-		Atu4610	0.48	-0.7
1,757,450	+		Atu4610	0.48	-0.1
1,757,540	-		Atu4610	0.57	+1.1
1,757,589	+		Atu4610	0.61	-0.9
1,757,630	+		Atu4610	0.65	-0.8
1,757,699	-		Atu4610	0.72	-1.7
1,757,708	-		Atu4610	0.72	-1.9
1,757,753	-		Atu4610	0.77	-1.4
1,757,753	-		Atu4610	0.77	-1.9
1,757,772	+		Atu4610	0.78	-0.5
1,757,813	-		Atu4610	0.82	-1.3
1,757,835	-		Atu4610	0.84	-0.6
1,757,911	-				-3.2
1,757,926	+				-0.9
1,757,961	-				-1.2
1,757,961	-				-1.2
1,757,968	+				+0.7
1,758,184	-				-0.1
1,758,193	-				+0.8
1,758,204	-				-0.1
1,758,204	-				-0.0
1,758,246	-				-0.0
1,758,254	-				+0.0
1,758,268	+				-0.4
1,758,271	-				-0.6
1,758,271	-				+0.0
1,758,276	-				-0.3
1,758,345	+		Atu4611	0.13	-0.3
1,758,345	+		Atu4611	0.13	-0.3
1,758,350	+		Atu4611	0.15	-0.7
1,758,350	+		Atu4611	0.15	-0.2
1,758,358	-		Atu4611	0.18	+0.8
1,758,358	-		Atu4611	0.18	-1.5
1,758,358	-		Atu4611	0.18	+0.1
1,758,418	-		Atu4611	0.39	-0.2
1,758,418	-		Atu4611	0.39	+0.3
1,758,450	-		Atu4611	0.51	-0.4
1,758,617	+				-0.0
1,758,625	-				-0.4
1,758,625	-				+0.6
1,758,653	+				-0.1
1,758,671	-				-0.1
1,758,693	+				-0.4
1,758,693	-				-0.3
1,758,725	-				+0.1
1,758,751	-				+0.4
1,758,755	-				-0.4
1,758,819	-				+0.6
1,758,892	+				+1.1